GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000990-TA|BGIBMGA000990-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold
         (290 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            27   0.62 
AJ420785-3|CAD12783.1|  380|Anopheles gambiae serpin protein.          26   1.4  
AJ271353-1|CAB69785.1|  380|Anopheles gambiae putative serine pr...    26   1.4  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    25   3.3  
DQ974163-1|ABJ52803.1|  595|Anopheles gambiae serpin 4B protein.       24   5.8  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    24   5.8  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 27.1 bits (57), Expect = 0.62
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 42   EIPHGDANDGVLHYYDSEIREVVKLQEST---EKKVLKISQTKYEEI----LKISKKYIF 94
            ++P  D +   LHY     + V+KL+         + +  Q  Y++I      + KK  +
Sbjct: 962  DMPTKDGDVFKLHYKVQNNKYVLKLKSMKGPLNNSLTEQKQKSYKQIDASGEAVEKKAQY 1021

Query: 95   INQVDKSFHEAVDDLNQ 111
              +VD+ F E VD+++Q
Sbjct: 1022 KKEVDEKFAEEVDNISQ 1038


>AJ420785-3|CAD12783.1|  380|Anopheles gambiae serpin protein.
          Length = 380

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 97  QVDKSFHEAVDDLNQQDFIAVSGDGANMGRKCKMPFLVLSTDHQ-IYIFDIQVMQY 151
           +V K  H+A  ++N++   A +  G  M  +C       + DH  +Y+   Q M Y
Sbjct: 315 KVSKVVHKAFIEVNEEGTEAAAATGMIMMMRCMPMHPYFTVDHPFLYVLRHQQMVY 370


>AJ271353-1|CAB69785.1|  380|Anopheles gambiae putative serine
           protease inhibitor protein.
          Length = 380

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 97  QVDKSFHEAVDDLNQQDFIAVSGDGANMGRKCKMPFLVLSTDHQ-IYIFDIQVMQY 151
           +V K  H+A  ++N++   A +  G  M  +C       + DH  +Y+   Q M Y
Sbjct: 315 KVSKVVHKAFIEVNEEGTEAAAATGMIMMMRCMPMHPYFTVDHPFLYVLRHQQMVY 370


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 11/48 (22%), Positives = 23/48 (47%)

Query: 166  SPKKIAHDCRKLSDCLYHKHNVKLKSVFDTQVGDLIITKNKKVTLPNK 213
            +PK +   CR  +D +   +  +++   +  + +  +TK  K  LP K
Sbjct: 1999 APKYVDVHCRDATDSVAQLYKQQIRKGVNPDMSNKSVTKTVKFFLPKK 2046


>DQ974163-1|ABJ52803.1|  595|Anopheles gambiae serpin 4B protein.
          Length = 595

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 61  REVVKLQESTEKKVLKISQTKYEEILKISKKYIFINQVDKSFHEAVDDLNQQDFIAVSGD 120
           + +VK      KK L+    +  + L +S     ++QVD   +E   +      + ++  
Sbjct: 504 KRIVKENGPVGKKGLRRRSKRAAQQLYVSNA---VHQVDLEVNETGTEGGAATIVTLNRS 560

Query: 121 GANMGRKCKMPFLVLSTDHQ 140
           G ++  + + PFL+L  + Q
Sbjct: 561 GTSVVFRAEAPFLLLIRNDQ 580


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 96  NQVDKSFHEAVDDLNQQDFIAVSGDGANMGRKCKMPFLVLSTDHQIYIFDI 146
           NQ D++    ++D    D I +SGD A    K  +P    + D   ++ D+
Sbjct: 68  NQKDQTGEIMIEDDGANDVITLSGDFA---EKIWVPDTFFANDKNSFLHDV 115


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.135    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 282,888
Number of Sequences: 2123
Number of extensions: 10652
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 6
length of query: 290
length of database: 516,269
effective HSP length: 63
effective length of query: 227
effective length of database: 382,520
effective search space: 86832040
effective search space used: 86832040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)