GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000989-TA|BGIBMGA000989-PA|IPR000834|Peptidase M14,
carboxypeptidase A
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818...    30   6.8  
06_01_0351 + 2537022-2538281                                           29   9.0  
01_06_0641 - 30782235-30782423,30782498-30782605,30782848-307829...    29   9.0  

>05_06_0219 +
           26479708-26479710,26481045-26481173,26481675-26481818,
           26481936-26482081,26482185-26482341,26482489-26482547,
           26482787-26482946,26483020-26483169,26483279-26483415,
           26483518-26483664,26483733-26483834,26483917-26483974,
           26484084-26484185,26484322-26484379,26484717-26484775,
           26486488-26486525,26486688-26486814,26486900-26487067,
           26487879-26488010,26488089-26488198,26488273-26488333,
           26488761-26488938,26489041-26489246,26489431-26489550,
           26489631-26489729,26489968-26490156,26490291-26490430,
           26491149-26491316,26491438-26491605,26491764-26491931,
           26492250-26492417,26492533-26492700,26492853-26493020,
           26493118-26493285,26493471-26493638,26493756-26493920,
           26494679-26494850,26495012-26495175,26495296-26495405,
           26495481-26495596,26495686-26495766,26495849-26496034,
           26496203-26496547,26496637-26496777,26496869-26496916,
           26497162-26497242,26497350-26497406,26497495-26497575,
           26497675-26497757,26497842-26497968
          Length = 2159

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 342 IEQKKKKAVVITARVHPGETPSSWMMKGFMDYLTGDSNQARELREKFIFKLVPMLNPDG- 400
           + ++K  +++++     G+T ++ M+  ++ +L G S       E+ + +  P+L   G 
Sbjct: 144 MNERKSNSILVSGESGAGKTETTKMLMRYLAFLGGRSRTGGRTVEQQVLESNPVLEAFGN 203

Query: 401 -VIVGNNRCSLTGKDLNRQY 419
              V NN  S  GK +  Q+
Sbjct: 204 AKTVRNNNSSRFGKFVEIQF 223


>06_01_0351 + 2537022-2538281
          Length = 419

 Score = 29.5 bits (63), Expect = 9.0
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 391 KLVPMLNPDGVIVGNNRCSLTGKDLNRQYRTVIRETY-PPVWHTKVMIRRLQEECGVAMY 449
           +LVP++N   V+  N    L G   NR ++ ++   + PP+ H    I  +    G   Y
Sbjct: 172 RLVPLINK-AVVSDNFTALLIG---NRTWKVIVTIGFSPPLAHFPSSIVDIASFQGKLYY 227

Query: 450 VDLHAHSRKHNIFIYGCESRK 470
           +      R+  ++I+G ++ K
Sbjct: 228 LTSDVRKRQEELYIFGVDNAK 248


>01_06_0641 -
           30782235-30782423,30782498-30782605,30782848-30782959,
           30783429-30783526,30784249-30784336,30784780-30784875,
           30785101-30785171,30786003-30786075,30787023-30787324,
           30787418-30787503,30788024-30788084,30789386-30789688
          Length = 528

 Score = 29.5 bits (63), Expect = 9.0
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 261 EEEEQFPSYTLTFNLEF---PHTDDAVYIAHCYPYTYSDLQEYLSRLQSHPVKSTFTKLR 317
           E EE   S  + F +++     T   +YI + Y   YS L+E LSR+  H   S F+KLR
Sbjct: 316 EPEEYLKSPVINFYMQYLRKSRTCGDLYIFNTY--FYSKLEEVLSRMGDHD-DSQFSKLR 372


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,751,723
Number of Sequences: 37544
Number of extensions: 865936
Number of successful extensions: 1701
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1701
Number of HSP's gapped (non-prelim): 3
length of query: 666
length of database: 14,793,348
effective HSP length: 87
effective length of query: 579
effective length of database: 11,527,020
effective search space: 6674144580
effective search space used: 6674144580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)