Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000989-TA|BGIBMGA000989-PA|IPR000834|Peptidase M14,
carboxypeptidase A
(666 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11736| Best HMM Match : No HMM Matches (HMM E-Value=.) 430 e-120
SB_34225| Best HMM Match : No HMM Matches (HMM E-Value=.) 173 3e-43
SB_47153| Best HMM Match : CCG (HMM E-Value=3.4) 163 3e-40
SB_39935| Best HMM Match : Peptidase_M14 (HMM E-Value=1.4e-15) 135 1e-31
SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15) 81 2e-15
SB_10768| Best HMM Match : Collagen (HMM E-Value=1.5) 56 9e-08
SB_55054| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 1e-06
SB_53766| Best HMM Match : MSSP (HMM E-Value=1) 36 0.10
SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 36 0.10
SB_49352| Best HMM Match : BDS_I_II (HMM E-Value=2.3) 35 0.18
SB_35960| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.74
SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 32 1.7
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.2
SB_55564| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.2
SB_10417| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.2
SB_8542| Best HMM Match : PT (HMM E-Value=4) 31 2.2
SB_29690| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.0
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 31 3.9
SB_44297| Best HMM Match : RVT_1 (HMM E-Value=0) 31 3.9
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 31 3.9
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29) 31 3.9
SB_1761| Best HMM Match : ERF (HMM E-Value=6.8) 31 3.9
SB_42440| Best HMM Match : RnaseH (HMM E-Value=0.9) 31 3.9
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.9
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.2
SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0) 30 5.2
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 30 6.9
SB_23173| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 6.9
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.1
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 29 9.1
>SB_11736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 430 bits (1060), Expect = e-120
Identities = 203/391 (51%), Positives = 275/391 (70%), Gaps = 4/391 (1%)
Query: 107 ELNPQPVGEEAGTVTFQYYPMSAVNYFSRSTVGGSRLYLSACASAGGDDE-LKFESRFES 165
EL + + EE G+V + P A YF +S GG+ + DD L FESRFES
Sbjct: 6 ELPLRVLPEETGSVVYDN-PQGAEKYFMKSRNGGNVADRPFYSIKSTDDHTLLFESRFES 64
Query: 166 GNLAKAIRITNAYYELHLRTDLYTNRHMQWFYFRVTNTKKQTMYRFSIVNLSKAESLYNE 225
GNL +AI+ + Y+L +RTDLYT++H QWFYFRV NT+ Y+F+I+N K+ SLYN+
Sbjct: 65 GNLKRAIKTGDYEYQLWMRTDLYTSKHTQWFYFRVRNTRAGATYKFTIMNFIKSGSLYND 124
Query: 226 GMRPLLYSTKDAQLHSIGWRRCGDNIAYFKNDPQNEEEEQFPSY-TLTFNLEFPHTDDAV 284
GMRPL YS +A + IGW R G N+ Y+K + + ++ + Y LT+ +F +++D
Sbjct: 125 GMRPLAYSEVNASKNKIGWLRTGSNVKYYKTEIRRDDTTKDRYYYALTWTCQFQYSNDTC 184
Query: 285 YIAHCYPYTYSDLQEYLSRLQSHPVKSTFTKLRLLCRTLAGNNVYYLTITSPPNSNEIEQ 344
Y AHCYPYTYSDLQEYL +++ PVKS K R+LCRTLAGN VY LT+T+P + +
Sbjct: 185 YFAHCYPYTYSDLQEYLQGIRNDPVKSRICKQRVLCRTLAGNFVYILTVTNP-SRRPSDA 243
Query: 345 KKKKAVVITARVHPGETPSSWMMKGFMDYLTGDSNQARELREKFIFKLVPMLNPDGVIVG 404
+ K+AVV+TARVHPGET SSWMMKG +D+LT +S A+ LR+ FIFK+VPM+NPDGVIVG
Sbjct: 244 EAKRAVVVTARVHPGETNSSWMMKGLLDFLTSNSADAKLLRDTFIFKIVPMINPDGVIVG 303
Query: 405 NNRCSLTGKDLNRQYRTVIRETYPPVWHTKVMIRRLQEECGVAMYVDLHAHSRKHNIFIY 464
N RCSL G+DLNR Y+T++++++P +WH + MI+RL EE + +Y D H HSRK N+F+Y
Sbjct: 304 NYRCSLAGRDLNRNYKTMLKDSFPSIWHVRNMIKRLLEEREITVYCDFHGHSRKQNVFMY 363
Query: 465 GCESRKNTDKRLQEQVFPLMLHKNAADKFSF 495
GCE+R N KRL+E+VFP M+ KNA K +F
Sbjct: 364 GCENRSNPLKRLRERVFPTMMAKNAPCKATF 394
>SB_34225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 173 bits (422), Expect = 3e-43
Identities = 88/180 (48%), Positives = 111/180 (61%), Gaps = 4/180 (2%)
Query: 136 STVGGSRLYLSACASAGGD--DELKFESRFESGNLAKAIRITNAYYELHLRTDLYTNRHM 193
S V R L C+ A LKFESRFE GNL +A RI Y+L L DLYT RH
Sbjct: 307 SMVVYDRTVLEPCSPAPATCPPHLKFESRFECGNLQQAKRIGRYEYDLVLSNDLYTKRHT 366
Query: 194 QWFYFRVTNTKKQTMYRFSIVNLSKAESLYNEGMRPLLYSTKDAQLHSIGWRRCGDNIAY 253
QW+YFRV N Y+F+I+NL K +SLYN GM+PLLYS+K A+ SIGW+R G ++ Y
Sbjct: 367 QWYYFRVENMVPGVTYKFNIINLLKRDSLYNYGMKPLLYSSKVAEDSSIGWQRSGHHVNY 426
Query: 254 FK--NDPQNEEEEQFPSYTLTFNLEFPHTDDAVYIAHCYPYTYSDLQEYLSRLQSHPVKS 311
+ N+ +TLTF +EFPH D Y+AHCYPY+YSDL+ YL L +P+ S
Sbjct: 427 TRTVNNKNVLLSRDLIYFTLTFQVEFPHAGDTCYLAHCYPYSYSDLERYLMSLVDNPLTS 486
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 446 VAMYVDLHAHSRKHNIFIYGCESRK---NTDKRLQEQVFPLML 485
V +Y DLH HSRK N+F+YGC + ++ L+E++FP M+
Sbjct: 527 VIIYCDLHGHSRKPNVFMYGCTADPKVYSSASFLEERLFPWMM 569
Score = 32.7 bits (71), Expect = 0.97
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 446 VAMYVDLHAHSRKHNIFIYG 465
V +Y DLH HSRK N+ +YG
Sbjct: 489 VIIYCDLHGHSRKPNVIMYG 508
>SB_47153| Best HMM Match : CCG (HMM E-Value=3.4)
Length = 328
Score = 163 bits (397), Expect = 3e-40
Identities = 82/199 (41%), Positives = 118/199 (59%), Gaps = 6/199 (3%)
Query: 149 ASAGGDDELKFESRFESGNLAKAIRITNAYYELHLRTDLYTNRHMQWFYFRVTNTKKQTM 208
+S G L+FESRFESGNL KAI++ Y+L L D+ H QWFYF V+N +
Sbjct: 122 SSDDGSKALRFESRFESGNLRKAIQVREYEYDLILNPDINCRHHHQWFYFEVSNMEADVP 181
Query: 209 YRFSIVNLSKAESLYNEGMRPLLYSTKDAQLHSIG-WRRCGDNIAYFKNDPQNEEE---- 263
YRF+I+N K S +N GM+P+LYS ++A + W R G N+ Y++N ++
Sbjct: 182 YRFNIINCEKINSQFNFGMQPVLYSMQEAVVEGRPCWARTGANVCYYRNYFSRSQDLGGG 241
Query: 264 EQFPSY-TLTFNLEFPHTDDAVYIAHCYPYTYSDLQEYLSRLQSHPVKSTFTKLRLLCRT 322
++ +Y T TF + FPH DD Y+A+ YPYTYS LQE+L+ ++S + + LC +
Sbjct: 242 QKSKTYFTATFTVTFPHADDVCYLAYHYPYTYSMLQEHLANIESSIDSDVYYRRSTLCHS 301
Query: 323 LAGNNVYYLTITSPPNSNE 341
LAGN +TITS P +
Sbjct: 302 LAGNACDVITITSNPRHRD 320
>SB_39935| Best HMM Match : Peptidase_M14 (HMM E-Value=1.4e-15)
Length = 364
Score = 135 bits (326), Expect = 1e-31
Identities = 83/237 (35%), Positives = 126/237 (53%), Gaps = 9/237 (3%)
Query: 360 ETPSSWMMKGFMDYLTGDSNQARELREKFIFKLVPMLNPDGVIVGNNRCSLTGKDLNRQY 419
ETPSS++ +G +D++ + A+ LRE +FK++PMLNPDGV++GN RCSL G DLNR +
Sbjct: 115 ETPSSYVCQGLIDFIISNHPVAKVLREYLVFKVIPMLNPDGVVLGNYRCSLMGFDLNRHW 174
Query: 420 RTVIRETYPPVWHTKVMIRRLQEE--CGVAMYVDLHAHSRKHNIFIYGCESRKNTDKRLQ 477
+P + +K ++ L + + Y+D+HAHS N F+YG + + ++R +
Sbjct: 175 HEPSPWAHPTLVASKNLLMELDSDSTAHLDFYIDIHAHSTLMNGFMYG--NIYDEEERYE 232
Query: 478 EQ-VFPLMLHKNAADKFSFENCKFRIQRSKEGTGRVVIW--MLGVANSYTMEASFGGSEL 534
Q VFP +L N AD FS N F K GTGR + + + YT+E SF
Sbjct: 233 RQAVFPKLLCAN-ADDFSMSNTSFNRDAMKAGTGRRFLGSSLDPETHCYTLEVSFFSYNT 291
Query: 535 GSRMSTHFSVQDYESLGRMFCETLLDFYDEDPSKERLRNKIVTRLLKEGSNADEPTN 591
S S ++ Y LGR T LD+Y + + +N + +E S A +N
Sbjct: 292 NSTTSP-YTEDGYYKLGRNVARTFLDYYKLNSLVVKSKNNQKSSTRRESSGASSRSN 347
Score = 51.6 bits (118), Expect = 2e-06
Identities = 28/65 (43%), Positives = 34/65 (52%)
Query: 157 LKFESRFESGNLAKAIRITNAYYELHLRTDLYTNRHMQWFYFRVTNTKKQTMYRFSIVNL 216
L F++ FESGNL + IT Y+L +R D R WF F V NT F+IVN
Sbjct: 50 LIFDACFESGNLGRVDYITEFEYDLFIRPDTCNPRFRVWFNFTVENTAPYQRVIFNIVNF 109
Query: 217 SKAES 221
SK S
Sbjct: 110 SKTXS 114
>SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15)
Length = 889
Score = 81.4 bits (192), Expect = 2e-15
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 352 ITARVHPGETPSSWMMKGFMDYLTG-DSNQARELREKFIFKLVPMLNPDGVIVGNNRCSL 410
++ARVHPGETPSS++ +GF+D+L D +A LR+++IFK++PMLNPDGV G+ R
Sbjct: 355 LSARVHPGETPSSFVFEGFLDFLLRTDDPRAAALRDQYIFKMIPMLNPDGVKRGHYRTDP 414
Query: 411 TGKDLNRQYRTVIRETYPPVWHTKVMI 437
G +LNR Y +P ++ + +I
Sbjct: 415 RGVNLNRVYLDPDPTLHPSIFAARSVI 441
Score = 39.1 bits (87), Expect = 0.011
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 441 QEECGVAMYVDLHAHSRKHNIFIYGCESRKNTDKRLQEQVFPLMLHKNAADKFSFENCKF 500
Q+E + YVDLH H+ K FIY +N + + ++P ++ N+A+ F F C F
Sbjct: 605 QKEGKLMYYVDLHGHASKRGCFIY-ANFMENEENYVNTILYPKLVSMNSAN-FDFTGCVF 662
Score = 37.9 bits (84), Expect = 0.026
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 188 YTNRHMQWFYFRVTNTKKQTMYRFSIVNLSKAESLYNEGMRPLL 231
Y N + WFYF V + + +++NL++ LYN+GM P +
Sbjct: 289 YENLNRTWFYFGVKGGVPGRVLKINMMNLNRQGKLYNQGMSPFV 332
>SB_10768| Best HMM Match : Collagen (HMM E-Value=1.5)
Length = 274
Score = 56.0 bits (129), Expect = 9e-08
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 479 QVFPLMLHKNAADKFSFENCKFRIQRSKEGTGRVVIWM-LGVANSYTMEASFGGSELG 535
+ P +LH N A FS +C F ++ SKE T RVV+W LGV SYTME+++ G + G
Sbjct: 66 RTLPRVLH-NIAPAFSLGSCSFVVEPSKESTARVVVWRELGVVRSYTMESTYSGCDQG 122
Score = 36.7 bits (81), Expect = 0.060
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 448 MYVDLHAHSRKHNIFIYGCES 468
+Y D H HSRK N+F+YGC +
Sbjct: 1 VYCDFHGHSRKKNVFMYGCST 21
>SB_55054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 52.0 bits (119), Expect = 1e-06
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 345 KKKKAVVITARVHPGETPSSWMMKGFMDYLTGDSNQA 381
+ K VVI+ARVHPGET +SWMMKG +DYL+ + A
Sbjct: 4 RDKLGVVISARVHPGETNASWMMKGLLDYLSSNDKVA 40
>SB_53766| Best HMM Match : MSSP (HMM E-Value=1)
Length = 157
Score = 35.9 bits (79), Expect = 0.10
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 149 ASAGGDDELKFESRFESGNLAKAIRI 174
+S G L+FESRFESGNL KAI++
Sbjct: 3 SSDDGSKALRFESRFESGNLRKAIQV 28
>SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 1258
Score = 35.9 bits (79), Expect = 0.10
Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 292 YTYSDLQEYLSRLQSHPVKSTFTKLRLLCRTLAGNNVYYLTITSPPNSNEIEQKKKKAVV 351
+ Y + +L L H T+L + +++ G +++ + ++S PN +E + + K +
Sbjct: 634 HNYDETLSFLKEL--HGQFPNITRLYSIGKSVEGRDLWVIALSSTPNKHEPGKPEFKYI- 690
Query: 352 ITARVHPGETPSSWMMKGFMDYLTGDSNQARELREKF---IFKLVPMLNPDG---VIVGN 405
A +H E ++ F YL + + E+ + L+P +NPDG G+
Sbjct: 691 --ANMHGNEVVGKEVLLTFAKYLCDNYKKDDEVTKALDTTRVHLLPSMNPDGYELAFKGD 748
Query: 406 NRCS-LTGK------DLNRQY--RTVIRETYPPVWHTKVMIRRLQE 442
NR + + G+ DLNR + + T P TK +++ ++E
Sbjct: 749 NRKNWIIGRSNSKNVDLNRNFPDQFFKSSTGEPQPETKAVMKWIKE 794
>SB_49352| Best HMM Match : BDS_I_II (HMM E-Value=2.3)
Length = 312
Score = 35.1 bits (77), Expect = 0.18
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 541 HFSVQDYESLGRMFCETLLDFYDEDPSKER 570
HF+ +D+E +GR FCE LL+ Y E S R
Sbjct: 6 HFNTRDFEDMGRHFCEVLLE-YSEAKSANR 34
>SB_35960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 33.1 bits (72), Expect = 0.74
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 138 VGGSRLYLSACASAGGDDELKFESRFESGNLAKAIRITNAYYELHLRTDLYTNRHMQWFY 197
VGG+ L+A A GG+ KF+S ES LA+ R A + Y R +
Sbjct: 400 VGGA--VLNATAFVGGNYLAKFQSNDESPALAEKERHDKALEKYQQDYGRYQQRRQKILD 457
Query: 198 FRVTNTKKQTMYRFSIVNLSKAESLYNE---GMRP--LLYSTKDAQLHSIG--WRR 246
++ + ++ ++ + + + A LYN+ G R LL+ ++A+ +G WRR
Sbjct: 458 WQAQSRERGSLAKQNFTDTDYALKLYNQTSLGPRAVRLLHPQQNAEERRVGVHWRR 513
>SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 441
Score = 31.9 bits (69), Expect = 1.7
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 14/117 (11%)
Query: 314 TKLRLLCRTLAGNNVYYLTITSPPNSNEIEQKKKKAVVITARVHPGETPSSWMMKGFMDY 373
T+L + +T+ ++ L I+ P +E + + K + +H E S ++ + Y
Sbjct: 54 TRLYSVGKTVENRDLLVLEISDKPGKHEKGEPEFKYI---GNMHGNEVVSREILLQLIGY 110
Query: 374 LTGDSNQARELR---EKFIFKLVPMLNPDG---VIVGN-----NRCSLTGKDLNRQY 419
L + + EL+ + ++P +NPDG ++G+ R + G DLNR +
Sbjct: 111 LLKNYQENSELKKLVDSTRIHIMPSMNPDGYEKAVMGDCQGVTGRANANGIDLNRNF 167
>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3511
Score = 31.5 bits (68), Expect = 2.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 355 RVHPGETPSSWMMKGFMDYLTGD 377
++HPG T SW KG DY G+
Sbjct: 59 KIHPGLTKLSWASKGISDYFIGE 81
>SB_55564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 31.5 bits (68), Expect = 2.2
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 138 VGGSRLYLSACASAGGDDELKFESRFESGNLAKAIRITNAYYELHLRTDLYTNRHMQWFY 197
VGG+ L+A A GG+ KF+S ES LA+ R A + Y R +
Sbjct: 150 VGGA--VLNATAFVGGNYLAKFQSNDESPALAEKERHDKALEKYQQVYGRYQQRRQKILD 207
Query: 198 FRVTNTKKQTMYRFSIVNLSKAESLYNE---GMRP--LLYSTKDAQLHSIG--WRR 246
++ + ++ + + + + A LYN+ G R LL+ ++A+ +G WRR
Sbjct: 208 WQAQSRERGYLAKQNFTDTDYALKLYNQTSLGPRAVRLLHPQQNAEERRVGVHWRR 263
>SB_10417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 31.5 bits (68), Expect = 2.2
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 520 ANSYTMEAS--FGGSELGSRMSTHFSVQDYESLGRMFCETLLDFYDED----PSKERLRN 573
+NS+ E FGG LG HF VQD + G + L FY D P+KE +
Sbjct: 178 SNSFDAEVDIEFGGRYLGCWHVEHFMVQDLKITGSAYEPGALTFYGRDEGLTPTKEVSAD 237
Query: 574 KIV 576
I+
Sbjct: 238 SII 240
>SB_8542| Best HMM Match : PT (HMM E-Value=4)
Length = 650
Score = 31.5 bits (68), Expect = 2.2
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 71 QQAPRWPSECQVVEERIHHITWSPATPEPYYSPSGKELNPQPVGEEAGTVTFQYYPMSAV 130
Q P W S QV+ W +T +P Y PSG NPQP +G +YYP
Sbjct: 425 QVLPLWKSTAQVLP------LWK-STAQPRYYPSG---NPQPRYYHSGNPQSRYYPSG-- 472
Query: 131 NYFSRSTVGGS 141
N SR + G+
Sbjct: 473 NLQSRYYLSGN 483
Score = 30.7 bits (66), Expect = 3.9
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 97 PEPYYSPSGKELNPQPVGEEAGTVTFQYYP 126
P+P+Y PSG NPQP +G +YYP
Sbjct: 181 PQPWYYPSG---NPQPKYYPSGNPQSRYYP 207
>SB_29690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 31.1 bits (67), Expect = 3.0
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 121 TFQYYPMSAVNYFSRSTVGGSRLYLSACASAGGDDELKFESRFESGNLAKAIRITNAYYE 180
T+ +Y M+++ VGG+ L+A A GG+ KF+S ES LA+ R A +
Sbjct: 214 TYTHYSMASIAIL----VGGA--VLNATAFVGGNYLAKFQSNDESPALAEKERHDKALEK 267
Query: 181 LHLRTDLYTNRHMQWFYFRVTNTKKQTMYRFSIVNLSKAESLYNEGM-RPLLYSTKDAQL 239
Y R + ++ + ++ ++ + + + A LYN+ + L ST+ +L
Sbjct: 268 YQQDYGRYQQRRQKILDWQAQSRERGSLAKQNFPDTDYALKLYNQTRPKQSLESTRAPEL 327
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 30.7 bits (66), Expect = 3.9
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 278 PHTDDAVYIAHCYPYTYSDLQEYLSRLQSHPVKSTFTKLRLLCRTLAGNNVYYLTITSPP 337
P+ DD + + + SDL++ L RL+ H +K +K ++ R V +L
Sbjct: 1118 PYLDDIIVFSQSFEEHVSDLRKVLQRLREHGIKLKPSKCKIFQR-----EVTFLGHVVAE 1172
Query: 338 NSNEIEQKKKKAVVITARVHPGETPSSWMMKGFMDY 373
++Q+ KAV P + G + Y
Sbjct: 1173 EGYRMDQESIKAVTDLKDTPPKTVGEVRRLMGLLSY 1208
>SB_44297| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 824
Score = 30.7 bits (66), Expect = 3.9
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 278 PHTDDAVYIAHCYPYTYSDLQEYLSRLQSHPVKSTFTKLRLLCRTLAGNNVYYLTITSPP 337
P+ DD + + + SDL++ L RL+ H +K +K ++ R V +L
Sbjct: 581 PYLDDIIVFSQSFEEHVSDLRKVLQRLREHGIKLKPSKCKIFQR-----EVTFLGHVVSE 635
Query: 338 NSNEIEQKKKKAVVITARVHPGETPSSWMMKGFMDY 373
++Q+ KAV P + G + Y
Sbjct: 636 EGYRMDQESIKAVTDLKDTPPKTVGEVRRLMGLLSY 671
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 30.7 bits (66), Expect = 3.9
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 278 PHTDDAVYIAHCYPYTYSDLQEYLSRLQSHPVKSTFTKLRLLCRTLAGNNVYYLTITSPP 337
P+ DD + + + SDL++ L RL+ H +K +K ++ R V +L
Sbjct: 181 PYLDDIIVFSQSFEEHVSDLRKVLQRLREHGIKLKPSKCKIFQR-----EVTFLGHVVSE 235
Query: 338 NSNEIEQKKKKAVVITARVHPGETPSSWMMKGFMDY 373
++Q+ KAV P + G + Y
Sbjct: 236 EGYRMDQESIKAVTDLKDTPPKTVGEVRRLMGLLSY 271
>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
Length = 1890
Score = 30.7 bits (66), Expect = 3.9
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 94 PATPEPYY---SPSGKE----LNPQPVGEEAGTVTFQYYPMSAVNYFSRSTVGGSRLYLS 146
P++P P+ + SG L P G + V F Y + ++ S T G LS
Sbjct: 1614 PSSPSPHNVKPNASGNSAFIPLIKHPAGAQPNLVDFTEYASKSYSFRSSRTALGETCSLS 1673
Query: 147 ACASAGGDD---ELKFESRFESGNLAKAIRITNAYYELHLR 184
C +G +D +L F S F L K ++ T+ Y R
Sbjct: 1674 ECGISGNNDREAKLVFASGFVFQQL-KTVQFTHFIYRTEHR 1713
>SB_1761| Best HMM Match : ERF (HMM E-Value=6.8)
Length = 299
Score = 30.7 bits (66), Expect = 3.9
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 278 PHTDDAVYIAHCYPYTYSDLQEYLSRLQSHPVKSTFTKLRLLCRTLAGNNVYYLTITSPP 337
P+ DD + + + SDL++ L RL+ H +K +K ++ R V +L
Sbjct: 15 PYLDDIIVFSQSFEEHVSDLRKVLQRLREHGIKLKPSKCKIFQR-----EVTFLGHVVSE 69
Query: 338 NSNEIEQKKKKAVVITARVHPGETPSSWMMKGFMDY 373
++Q+ KAV P + G + Y
Sbjct: 70 EGYRMDQESIKAVTDLKDTPPKTVGEVRRLMGLLSY 105
>SB_42440| Best HMM Match : RnaseH (HMM E-Value=0.9)
Length = 348
Score = 30.7 bits (66), Expect = 3.9
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 278 PHTDDAVYIAHCYPYTYSDLQEYLSRLQSHPVKSTFTKLRLLCRTLAGNNVYYLTITSPP 337
P+ DD + + + SDL++ L RL+ H +K +K ++ R V +L
Sbjct: 28 PYLDDIIVFSQSFEEHVSDLRKVLQRLREHGIKLKPSKCKIFQR-----EVTFLGHVVSE 82
Query: 338 NSNEIEQKKKKAVVITARVHPGETPSSWMMKGFMDY 373
++Q+ KAV P + G + Y
Sbjct: 83 EGYRMDQESIKAVTDLKDTPPKTVGEVRRLMGLLSY 118
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 30.7 bits (66), Expect = 3.9
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 278 PHTDDAVYIAHCYPYTYSDLQEYLSRLQSHPVKSTFTKLRLLCRTLAGNNVYYLTITSPP 337
P+ DD + + + SDL++ L RL+ H +K +K ++ R V +L
Sbjct: 673 PYLDDIIVFSQSFEEHVSDLRKVLQRLREHGIKLKPSKCKIFQR-----EVTFLGHVVSE 727
Query: 338 NSNEIEQKKKKAVVITARVHPGETPSSWMMKGFMDY 373
++Q+ KAV P + G + Y
Sbjct: 728 EGYRMDQESIKAVTDLKDTPPKTVGEVRRLMGLLSY 763
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 30.3 bits (65), Expect = 5.2
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 13/127 (10%)
Query: 76 WPSECQVVEER--IHHITWSPATPEPYYSPSGKELNP--QPVGEEAGTVTFQYYPMSAVN 131
W S +V R I + ++ + +P Y K P P E+ ++ P S
Sbjct: 364 WKSIRPIVSHRMRITDVAFNAVSSKPVY----KAFRPVKSPGREQKPVISLMPTPKSVTT 419
Query: 132 YFSRSTVGGSRLYLSACASAGGDDELKFESRFESGNLAKAIRITNAY--YELHLR--TDL 187
+ +T + S A DDE +S FESG A++ R N + ++H R T +
Sbjct: 420 GTTPATTSEQLVAASGSVVARDDDEASQDSGFESGGNAES-RNRNEWKGAQIHCRPVTAV 478
Query: 188 YTNRHMQ 194
NRH++
Sbjct: 479 ELNRHIR 485
>SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1623
Score = 30.3 bits (65), Expect = 5.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 278 PHTDDAVYIAHCYPYTYSDLQEYLSRLQSHPVKSTFTKLRLLCR 321
P+ DD + + + SDL++ L RL+ H +K +K ++ R
Sbjct: 1049 PYLDDIIVFSQSFEEHVSDLRKVLQRLREHGIKLKPSKCKIFQR 1092
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 29.9 bits (64), Expect = 6.9
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 278 PHTDDAVYIAHCYPYTYSDLQEYLSRLQSHPVKSTFTKLRLLCRTLAGNNVYYLTITSPP 337
P+ DD + + + SDL++ L RL+ H +K +K ++ R V +L
Sbjct: 274 PYLDDIIVFSQNFEEHVSDLRKVLQRLREHGIKLKPSKCKIFQR-----EVTFLGHVVSE 328
Query: 338 NSNEIEQKKKKAVVITARVHPGETPSSWMMKGFMDY 373
++Q+ KAV P + G + Y
Sbjct: 329 EGYRMDQESIKAVTDLKDTPPKTVGEVRRLMGLLSY 364
>SB_23173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 29.9 bits (64), Expect = 6.9
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 486 HKNAADKFSFENCKFRIQRSKEGTGRVVIWMLGVANSYTMEASFGGSELGSRMSTHFSVQ 545
H+NA+++FS E +R QR K +++ GV N+ S + S ++ +++
Sbjct: 31 HRNASEEFSLELRSYRPQRHKYSLVEILMAAKGVINTRDPSGSTYRELVTSLVTQEPALK 90
Query: 546 DYESL 550
D++ L
Sbjct: 91 DFDLL 95
>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1215
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 370 FMDYLTGDSNQARELREKFIFKLVPMLNPDGVIVGNNRCSLTGKDLNRQYRTVI-RETYP 428
++ L+G+ + + K I + +L+ +G I+ N G+DL +YR+VI +
Sbjct: 376 YVTVLSGEFERGHKTANKNIEVTMHVLSDNGDILENVISYGAGEDLVSEYRSVIYYHSGK 435
Query: 429 PVWHTKVMI 437
P WH + +
Sbjct: 436 PEWHETIKL 444
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 29.5 bits (63), Expect = 9.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 60 LFALPKELDCPQQAPRWPSECQVVEERIHH 89
L P+E CP Q P + +E Q ++E++ H
Sbjct: 2308 LMRYPQETACPTQNPSFQAETQDIDEKLAH 2337
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.134 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,092,290
Number of Sequences: 59808
Number of extensions: 1014515
Number of successful extensions: 2218
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2176
Number of HSP's gapped (non-prelim): 41
length of query: 666
length of database: 16,821,457
effective HSP length: 87
effective length of query: 579
effective length of database: 11,618,161
effective search space: 6726915219
effective search space used: 6726915219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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