GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000989-TA|BGIBMGA000989-PA|IPR000834|Peptidase M14,
carboxypeptidase A
         (666 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    28   0.28 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   6.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 0.28
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 203 TKKQTMYRFSIVNLSKAESLYNEGMRPLLYSTKDAQLHSIGWR---RCGDNIAYFKNDPQ 259
           T K+     S +  +K  S++N+   P+L +     +  +GW+     GD I   +ND  
Sbjct: 345 TLKKGCLLVSGIASAKVRSMFNDSGNPILKAKPSEVVQILGWKELPNVGDEILEVENDKI 404

Query: 260 NEEEEQF 266
            +E  +F
Sbjct: 405 LQEVIKF 411


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 176  NAYYELHLRTDLYTNR-HMQWFYFRVTNTKKQTMYRFSIVNLSKAESLYNEGMRPL 230
            + Y  L +  D+ T + +MQW  + +   +K  ++ +S+V       + N  +RPL
Sbjct: 1000 HVYAPLKISLDVNTPKGNMQWKIWPMKGEEKSRLFHYSVVPFVSNHDILN--LRPL 1053


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 260 NEEEEQFPSYTLTFNLEFPHTDDAVYIAH 288
           N  + Q+ S  +  N+   HT + V+++H
Sbjct: 96  NNADPQYSSAVINTNVIVSHTGEVVWLSH 124


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,879
Number of Sequences: 429
Number of extensions: 9777
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 666
length of database: 140,377
effective HSP length: 62
effective length of query: 604
effective length of database: 113,779
effective search space: 68722516
effective search space used: 68722516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)