Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000988-TA|BGIBMGA000988-PA|IPR007087|Zinc finger,
C2H2-type
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 61 5e-10
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 58 3e-09
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 54 5e-08
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 51 4e-07
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 51 4e-07
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 48 3e-06
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 47 8e-06
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 46 1e-05
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 44 6e-05
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 40 7e-04
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 39 0.002
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 37 0.009
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 33 0.11
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 31 0.58
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 31 0.58
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 29 1.3
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 29 2.3
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 29 2.3
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 28 3.1
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 28 4.1
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 27 5.4
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 27 5.4
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 5.4
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 7.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 7.1
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 27 7.1
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 27 9.4
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 9.4
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 27 9.4
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 27 9.4
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 60.9 bits (141), Expect = 5e-10
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 427 CSKNFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHTGVRPYKCNL-- 482
C K +S LL +H++ HS+ + ++C + C K F LK H R HT V+P+ C+
Sbjct: 30 CGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDG 89
Query: 483 CEKSFTQRCSLESHCLKVHGVQHTYAYKERRTKMYVC--EECGHTTSEPEEHYMHLKKQH 540
C+ F + LE H ++VH R+ K Y C E C S+ ++ H+ H
Sbjct: 90 CDAQFYTQQHLERH-IEVH----------RKPKPYACTWEGCDECFSKHQQLRSHISACH 138
Query: 541 PY 542
+
Sbjct: 139 TH 140
Score = 35.1 bits (77), Expect = 0.027
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 452 CTFCGKGFNDTFDLKRHTRTHTGV----RPYKCNL--CEKSFTQRCSLESHCLKVH 501
C+ CG+ F L+ H H + Y C + C+KSFT+ +L+ H +H
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIH 261
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 58.0 bits (134), Expect = 3e-09
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 422 FVCRV--CSKNFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGVRPYK 479
+VC C+K F+ L HM H++ + + C+ C K F D +RH + HTG++ +
Sbjct: 570 YVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFA 629
Query: 480 CNLCEKSFTQRCSLESH 496
C C + F + +L H
Sbjct: 630 CVTCNQRFARMDALNRH 646
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 422 FVCRVCSKNFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTG 474
F C +C K+F+ Q RH + H+ +K + C C + F L RH ++ G
Sbjct: 600 FQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRHYKSEVG 652
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 54.0 bits (124), Expect = 5e-08
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 421 KFVCRV--CSKNFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGVRPY 478
K+VC C+K + + + H++ H + Y C C GF DLKRH R H RPY
Sbjct: 442 KYVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPY 501
Query: 479 KCNLCEKSFTQRCSLESH 496
C C K F + +L H
Sbjct: 502 VCE-CLKRFNRLDALNRH 518
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 51.2 bits (117), Expect = 4e-07
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 402 RQREEEKNKQVLVSEDDPTK-FVCRVCSKNFSLQRLLNRHMK-CHSDVKRYLCTFCGKGF 459
R+R + N++ V K FVC CSK F L RH++ H+ K ++C CGK F
Sbjct: 402 RKRRQPSNRKTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRF 460
Query: 460 NDTFDLKRHTRTHTGVRP 477
+ +L++H R H P
Sbjct: 461 SRRDNLRQHERLHVNASP 478
Score = 29.1 bits (62), Expect = 1.8
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 390 GVKNPLATEANAR-QREEEKNKQVLVSEDDPTKFVCRVCSKNFSLQRLLNRHMKCHSDVK 448
G K+ + E + + +R E + + FVC +C K FS + L +H + H +
Sbjct: 419 GGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHERLHVNAS 477
Query: 449 -RYLCTFCGKGF 459
R C F G+
Sbjct: 478 PRLACFFQPSGY 489
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 51.2 bits (117), Expect = 4e-07
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 449 RYLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCNL--CEKSFTQRCSLESHCLKVHGV 503
RY CT C +GF+ LK HT +HTG RP+ C+ C K+F R ++ H ++HG+
Sbjct: 467 RYRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRH-QRIHGL 522
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 48.4 bits (110), Expect = 3e-06
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 417 DDPTKFVCRVCSKNFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTHT 473
D P + C +C+K F RH++ H+ K ++CTF C K F+ + +L RH R HT
Sbjct: 21 DAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHT 79
Score = 40.7 bits (91), Expect = 5e-04
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 450 YLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCNL--CEKSFTQRCSLESHCLKVH 501
Y C C K F RH RTHTG +P+ C C K F++ L H ++H
Sbjct: 26 YKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHA-RIH 78
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 467 RHTRTHTGVRPYKCNLCEKSFTQRCSLESHCLKVH 501
R T+ RPYKC LC K+F R ++ ++ H
Sbjct: 15 RSTKNPDAPRPYKCPLCTKAF-YRLEHQTRHIRTH 48
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 46.8 bits (106), Expect = 8e-06
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 449 RYLCTF--CGKGFNDTFDLKRHTRTHTGVRPYKCNLCEKSFTQRCSLESHCLKVH 501
R+ CT+ C K F L+RH RTH V+ + C+ C ++F + L H ++H
Sbjct: 25 RFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMH 79
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 418 DPTKFVCRV--CSKNFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGV 475
DP +F C C K+F+ + L RH + H +VK + C+FC + F + L RH + +
Sbjct: 23 DP-RFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQ---M 78
Query: 476 RPYKCNLCEKSFTQRCSLESHCLKVH 501
K NL E+ C+ H
Sbjct: 79 HLQKQNLSERRMLNASCFLGFCVLAH 104
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 447 VKRYLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCNL--CEKSFTQRCSLESH 496
+K Y C FC + F+ RH R+HTG +P++C+ C+K FT+R L H
Sbjct: 1 MKSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRH 52
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 422 FVCRVCSKNFSLQRLLNRHMKCHSDVKRYLCTF--CGKGFNDTFDLKRHTRTH 472
+ C C + F Q RH++ H+ K + C++ C K F +L RH RTH
Sbjct: 4 YECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 44.0 bits (99), Expect = 6e-05
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 447 VKRYLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCNL-------CEKSFTQRCSLESHCLK 499
VK+Y+C C + F LKRH R+HT +P+ C+ C + F++R L H K
Sbjct: 67 VKQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQK 126
Query: 500 VH 501
+H
Sbjct: 127 IH 128
Score = 34.7 bits (76), Expect = 0.035
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 421 KFVCRVCSKNFSLQRLLNRHMKCHSDVKRYLC-------TFCGKGFNDTFDLKRH-TRTH 472
++VC C++ F+ L RH++ H++ K + C T CG+ F+ L RH + H
Sbjct: 69 QYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIH 128
Query: 473 TGVRP 477
+P
Sbjct: 129 RNPQP 133
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 40.3 bits (90), Expect = 7e-04
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 449 RYLCTF--CGKGFNDTFDLKRHTRTHTGVRPYKCNLCEKSFTQRCSLESHCLKVHGVQH 505
RY C F C K F +RH R+HT + + C C SFT+ L H + H Q+
Sbjct: 16 RYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKHVKQN 74
Score = 37.1 bits (82), Expect = 0.007
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 408 KNKQVLVSEDDPTKFVC--RVCSKNFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDL 465
K K+ ++ ++ C + C+K+F+ + RH + H++ K ++C C F + L
Sbjct: 3 KAKKSRAYQEGDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVL 62
Query: 466 KRH 468
RH
Sbjct: 63 NRH 65
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 415 SEDDPTKFVCRVCSKNFSLQRLLNRHM 441
S + F+C CS +F+ +LNRH+
Sbjct: 40 SHTNSKAFICPHCSSSFTRSDVLNRHV 66
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 463 FDLKRHTRTHTGVRPYKCNL--CEKSFTQRCSLESHCLKVH 501
F L H R+HTG +P+ C++ C++SFT+ +L H VH
Sbjct: 91 FALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVH 131
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 36.7 bits (81), Expect = 0.009
Identities = 18/52 (34%), Positives = 22/52 (42%)
Query: 417 DDPTKFVCRVCSKNFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRH 468
D F C C+K F+ L RH CHS + C +C LKRH
Sbjct: 26 DSKRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRH 77
Score = 34.3 bits (75), Expect = 0.047
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 446 DVKR-YLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCNLCEKSFTQRCSLESHCLKVH 501
D KR + C C K F +L RH H+ P C CE ++ L+ H + H
Sbjct: 26 DSKRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFH 82
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 33.1 bits (72), Expect = 0.11
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 188 SNEGILGNLSDSTEDFADLLNNPVESLTDSEVRESSSISPDSVHNAVDIEALA----EQV 243
++E L N+S +TED + L+N PV + E R++S+ + S+ + LA ++
Sbjct: 79 TDEEYLQNVSTTTEDVSMLINTPVTEKYEQEHRDTSAQATPSIVEQSPNQMLANFFSKKG 138
Query: 244 HLSRQYYEKANYLAFANQEQSPS 266
EK ++ N+ SPS
Sbjct: 139 KTPLNEIEKEGIISILNKSASPS 161
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 30.7 bits (66), Expect = 0.58
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 9/125 (7%)
Query: 360 GSVTDTKIQILQQRLGLPAELPLEFINGGHGVKNPLATEANARQRE-EEKNKQVLVSEDD 418
G +TD + +L +G+P + FI G LA ++ +E +++ D
Sbjct: 49 GRLTDEQTALL---MGIPIK-ECRFIAGKLREDRLLAIQSRTEMKEGQQRQYHTTYFYID 104
Query: 419 PTKFVCRVCSKNFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGVRPY 478
+ + + L + + M+ D K Y+C FC K F+ L T T +
Sbjct: 105 FCSTIDSIKWRMHQLVKTVEDRMRNDFDSKGYVCPFCNKKFSSLDVLSLVTNEGT----F 160
Query: 479 KCNLC 483
CN+C
Sbjct: 161 ACNVC 165
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 30.7 bits (66), Expect = 0.58
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 118 TTNFTEQSKQYSLMQ-----NAPYGLALKDEEVDYENKLENLGAIGNYSSNFD 165
TTN Y L + N P + K +E+D + LEN+ GNY S+F+
Sbjct: 9 TTNLQRIRSLYRLQEDKNNLNIPEPINGKVQEIDTKESLENVDRYGNYRSDFN 61
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 475 VRPYKCNLCEKSFTQRCSLESHCLKVHGVQHTYAYKERRTKMYVC 519
V + C C+ +FT L SHC + H ++ Y C
Sbjct: 55 VHEFCCLFCDSTFTCLKDLWSHCKEAHNFDFYQVKQQNNLDFYAC 99
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 28.7 bits (61), Expect = 2.3
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 314 FSSHPLDLDSPTGVSLPSPGGNNSLDGNSHMENTPISPAAAVSLKKGSVTDTKIQILQQR 373
+ SHP+ L S P G SL + M+ P++ +S K G V D + ++ +
Sbjct: 518 YVSHPVSLSS-NSFHTEFPIG--SLMRFTVMDLNPVTCTPEISEKTGRVVDCSEEKVKIQ 574
Query: 374 LGLPAELPLEFINGGHGVKNPLAT 397
L L L L+F G ++N T
Sbjct: 575 LDLGDRLDLKFDVNGEVIRNRYGT 598
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 163 NFDDPMVVEDVIDNYQFNATLTFPGSNEGILGNLSDSTEDFADLLNNPVESLTDSEVRES 222
N DDP + + V ++ T P SN +L N S E + L+ VE E+ +
Sbjct: 179 NLDDPQIFDVVSEHIDITQTSDAPNSNRNLLLNNSMLQEKISWYLDT-VELHLLQEIENA 237
Query: 223 SSISPDSVHN 232
S P + N
Sbjct: 238 SDSFPMIIDN 247
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 28.3 bits (60), Expect = 3.1
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 164 FDDPMVVEDVIDNYQFNATLTFP-GSNEGILGNLSDSTEDFADLLNNPVESLTDSEVRES 222
+D P ED+ + NA L P G+N + ++ S D++D + + TDS++ +
Sbjct: 1046 YDAPSDKEDLGSS---NAPLDVPHGANRSSMDEVNGSKYDYSDGILDGSGQYTDSDMSDD 1102
Query: 223 SSISPDSVHNAVDIEALAEQV 243
+ DS + + A+ +V
Sbjct: 1103 ENSLKDSQSSVLSFSAVPTKV 1123
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 27.9 bits (59), Expect = 4.1
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 175 DNYQFNATLTFPGSNEGILGNLSDSTEDFADLLNNPVESLTDSEVRESSSISPDSVHNAV 234
+N Q T P ++ + N++ T L+ NP L+ S + +S +P++ H A
Sbjct: 313 ENMQSEVQTTNPSASTSAVTNITKPT-----LIQNPSTPLSVSNSKVASPETPNATHTAP 367
Query: 235 DIEALAEQVHLSRQYYEKANYLAFANQEQSPSYNFAKER 273
+E +Y A A A ++SPS+++ ++
Sbjct: 368 KVE---------MRYASAAAAAAAALAKESPSHHYIMQQ 397
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 342 SHMENTPISPAAAVSLKKGSVTDTKIQILQQRLGLPAELPLEFINGGHGV 391
S + + I A+V + + +R G P E P+EF NGG+ V
Sbjct: 1499 SELPSKAIIQVASVDFQSVDCHGNPVIEFLKRNGKPIEQPVEFENGGYSV 1548
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 27.5 bits (58), Expect = 5.4
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 174 IDNYQFNA-TLTFPGSNEGILGNLSDSTEDFADLLNNPVESLTDSEVRESSSISPDSV 230
IDN+ L EG+LG+ +D DLL +P E++ DSE ES+ DS+
Sbjct: 167 IDNFNKQTLALEEEAVEEGVLGD----EDDGIDLLMDPDENMEDSE-DESNGPQADSI 219
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 27.5 bits (58), Expect = 5.4
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 363 TDTKIQILQQRLGLPAELPLEFIN---GGHGVKNPLATEANARQREEEKNK-QVLVSEDD 418
+D+K+ + Q +E +E +N + +K+P A ++ +EK + VS +
Sbjct: 183 SDSKLNVDQINSTTESEKRVEKVNPNIANNPLKSPDAVAYSSETVSDEKQPTEHPVSANV 242
Query: 419 PTKFVCRVCSKNFSLQRLLNRHMKCHS 445
P K VC +N + H K HS
Sbjct: 243 PAKSEKAVCDENTKISLTNTEHYKFHS 269
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 476 RPYKCNLCEKSFTQRCSLESHCLKVHGVQHTYAYKERRTKM 516
+PY+C +C K + L+ H H +Q + A +R +M
Sbjct: 397 KPYRCEVCSKRYKNLNGLKYHRTHSH-LQVSMAQAQREVQM 436
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.1 bits (57), Expect = 7.1
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 219 VRESSSISPDSVHNAVDIEALAEQVHLSRQYYEKANYLAFANQEQSPSYNFAKERPDLLM 278
+RE S + S+ NA +I L Q+ ++QYYEK K + +L
Sbjct: 1554 LREHSP-TQGSLENADEIARLRSQLESTKQYYEKEKETEILAARSELVAEKEKTKEELEN 1612
Query: 279 QLN 281
QLN
Sbjct: 1613 QLN 1615
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 315 SSHPLDLDSPTGVSLPSPGGNNSLDGNSHMENTPISPAAAVSLKKGSVT 363
S HP+DLD+P L P + S + TP+ P ++ SL G+++
Sbjct: 152 SDHPIDLDNPE--HLTPPSSFITAKQLSRLP-TPLPPPSSSSLPTGTIS 197
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 542 YSPALLKFYDKRHFKFTNAAFANQLL 567
YSP L+ D H+K + F +QLL
Sbjct: 367 YSPGLVGLGDALHYKIQSTGFKSQLL 392
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 424 CRVCSKNFSLQRLLNRHMKCHSDVKRYLCTFC 455
C C+ S R+ KC+S V R CTFC
Sbjct: 1240 CNSCNSTTSNTRICE---KCYSLVPRMSCTFC 1268
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 392 KNPLATEANARQREEEKNKQVLVSEDDPTKFVCRVC 427
KNP T A ++EE KQV+ S + C +C
Sbjct: 175 KNPSTTNAEI-EKEEPSKKQVVPSSQRLADYKCVIC 209
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 26.6 bits (56), Expect = 9.4
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 189 NEGILGNLSDSTEDFADLLNNPVESLTDSEVRESSSISPDSVHNAVDI-EALAEQVHLSR 247
+EGI+G + + ++F +L + L D + + S+ + D EA +E+V S
Sbjct: 168 SEGIVGYMLEEWDNFVSMLEDARSDLEDYKEGDDSNWDDFGSESEDDSKEAHSEEVFRSE 227
Query: 248 QYYEKANYL 256
+ + AN L
Sbjct: 228 EQIQLANSL 236
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,936
Number of Sequences: 5004
Number of extensions: 115556
Number of successful extensions: 368
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 52
length of query: 576
length of database: 2,362,478
effective HSP length: 77
effective length of query: 499
effective length of database: 1,977,170
effective search space: 986607830
effective search space used: 986607830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)
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