GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000988-TA|BGIBMGA000988-PA|IPR007087|Zinc finger,
C2H2-type
         (576 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    70   2e-13
CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    34   0.012
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    31   0.11 
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    31   0.11 
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            25   5.5  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            25   5.5  
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    24   9.6  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 69.7 bits (163), Expect = 2e-13
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 10/116 (8%)

Query: 422 FVCRVCSKNFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCN 481
           ++C  C+   +   LL+RH+K HS+ + + C  C +GF     L+ H  THTG +P++C 
Sbjct: 127 YMCNYCNYTSNKLFLLSRHLKTHSEDRPHKCVVCERGFKTLASLQNHVNTHTGTKPHRCK 186

Query: 482 LCEKSFTQRCSLESHCLKVHGVQHTYAYKERRTKMYVCEECGHTTSEPEEHYMHLK 537
            C+  FT    L  H            Y+    + + C EC + + E  +   H++
Sbjct: 187 HCDNCFTTSGELIRH----------IRYRHTHERPHKCTECDYASVELSKLKRHIR 232



 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 9/104 (8%)

Query: 437 LNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCNLCEKSFTQRCSLESH 496
           L RH++ H+  K + C  C     D F L RH R HTG +PY C++C   FTQ     S+
Sbjct: 227 LKRHIRTHTGEKPFQCPHCTYASPDKFKLTRHMRIHTGEKPYSCDVCFARFTQ-----SN 281

Query: 497 CLKVHGVQHTYAYKERRTKMYVCEECGHTTSEPEEHYMHLKKQH 540
            LK H + H    K     ++ C+ C  T     +  +H++  H
Sbjct: 282 SLKAHKMIHQVGNK----PVFQCKLCPTTCGRKTDLRIHVQNLH 321



 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 4/133 (3%)

Query: 411 QVLVSEDDPTKFVCRVCSKNFSLQRLLNRHMKCHSDVKRYLCTFCGKGFNDTFDLKRHTR 470
           Q L + D P K  C+ C   F  +     H K H   K Y C +C         L+ H  
Sbjct: 318 QNLHTADKPIK--CKRCDSTFPDRYSYKMHAKTHEGEKCYRCEYCPYASISMRHLESHLL 375

Query: 471 THTGVRPYKCNLCEKSFTQRCSLESHCLKVHGVQHTYAYKERRTKMYVCEECGHTTSEPE 530
            HT  +PYKC+ C ++F Q+  L+ H    H     Y     + K ++C  C        
Sbjct: 376 LHTDQKPYKCDQCAQTFRQKQLLKRHMNYYHNPD--YVAPTPKAKTHICPTCKRPFRHKG 433

Query: 531 EHYMHLKKQHPYS 543
               H+    P S
Sbjct: 434 NLIRHMAMHDPES 446



 Score = 52.8 bits (121), Expect = 2e-08
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 424 CRVCSKNFSLQRLLNRHMKC-HSDVKRYLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCNL 482
           C+ C   F+    L RH++  H+  + + CT C     +   LKRH RTHTG +P++C  
Sbjct: 185 CKHCDNCFTTSGELIRHIRYRHTHERPHKCTECDYASVELSKLKRHIRTHTGEKPFQCPH 244

Query: 483 CEKSFTQRCSLESHCLKVHGVQHTYA 508
           C  +   +  L  H +++H  +  Y+
Sbjct: 245 CTYASPDKFKLTRH-MRIHTGEKPYS 269



 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 12/143 (8%)

Query: 397 TEANARQREEEKNKQVLVSEDDPTKFVCRVCSKNFSLQRLLNRHMKCHSDVKRYLCTFCG 456
           TE +    E  K K+ + +      F C  C+     +  L RHM+ H+  K Y C  C 
Sbjct: 215 TECDYASVELSKLKRHIRTHTGEKPFQCPHCTYASPDKFKLTRHMRIHTGEKPYSCDVCF 274

Query: 457 KGFNDTFDLKRHTRTH-TGVRP-YKCNLCEKSFTQRCSLESHCLKVHGVQHTYAYKERRT 514
             F  +  LK H   H  G +P ++C LC  +  ++  L  H   +H             
Sbjct: 275 ARFTQSNSLKAHKMIHQVGNKPVFQCKLCPTTCGRKTDLRIHVQNLHTAD---------- 324

Query: 515 KMYVCEECGHTTSEPEEHYMHLK 537
           K   C+ C  T  +   + MH K
Sbjct: 325 KPIKCKRCDSTFPDRYSYKMHAK 347


>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 33.9 bits (74), Expect = 0.012
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 10/74 (13%)

Query: 469 TRTHTGVRPYKCNLCEKSFTQRCSLESHCLKVHGVQH-TYAYKERRTKMYVCEECGHTTS 527
           T T  G R ++CNLC+ S+  +   + H  +VH + +  +  K        C  C    S
Sbjct: 341 TITSEGQR-FQCNLCDMSYRTKLQYQKHEYEVHRISNENFGIK--------CTICHKLFS 391

Query: 528 EPEEHYMHLKKQHP 541
           + +++ +H++  HP
Sbjct: 392 QRQDYQLHMRAIHP 405


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 450 YLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCNLCEKSFTQRCSLESHCLKVH 501
           Y C  C K  ++ +    H   H   + ++C +C + FT+R ++++HC   H
Sbjct: 899 YSCVSCHKTVSNRW---HHANIHRP-QSHECPVCGQKFTRRDNMKAHCKVKH 946


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 452 CTFCGKGFNDTFDLKRHTRTHTGVRPYKCNLCEKSFTQRCSLESHCLKVH 501
           C  CGK       ++ H   H   R ++C LC  ++T+  +L +HC   H
Sbjct: 502 CKLCGKVVTH---IRNHYHVHFPGR-FECPLCRATYTRSDNLRTHCKFKH 547


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 175 DNYQFNATLTFPGSNEGILGNLSDSTEDFADLLNNPVESLT 215
           D   F  T+T   SNE I+   + STE      N P+   T
Sbjct: 493 DGSSFPLTITSNDSNEQIITFSTASTEQMTVTFNRPLNQWT 533


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 175 DNYQFNATLTFPGSNEGILGNLSDSTEDFADLLNNPVESLT 215
           D   F  T+T   SNE I+   + STE      N P+   T
Sbjct: 494 DGSSFPLTITSNDSNEQIITFSTASTEQMTVTFNRPLNQWT 534


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adhesion
            protein protein.
          Length = 1881

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 19/131 (14%)

Query: 115  NENTTNFTEQSKQYSLMQNAPYGLA---LKDEEVDYENKLENLGAIGNYS----SNFDD- 166
            N+N   F +   ++S+ +N+ YG+A   +  E+ D +NK       G        + DD 
Sbjct: 950  NDNNPKFRKPFYKHSIAENSQYGVAVCTVVAEDAD-QNKTVKYSLEGEKGVLELLHVDDE 1008

Query: 167  --PMVVEDVIDNYQFN-ATLTFPGSNEGILGNLSDSTEDFADLL----NNP--VESLTDS 217
               +VV + ID+ +++    +   ++ G     S   E F  +L    NNP  V+S+ D 
Sbjct: 1009 TGEIVVRNRIDHEEYSWLNFSVRAADTGTPPRAS-FVEVFVQVLDENDNNPYFVDSVNDY 1067

Query: 218  EVRESSSISPD 228
             V E++S+  +
Sbjct: 1068 YVSENASVGAE 1078


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.314    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,730
Number of Sequences: 2123
Number of extensions: 24582
Number of successful extensions: 45
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 12
length of query: 576
length of database: 516,269
effective HSP length: 68
effective length of query: 508
effective length of database: 371,905
effective search space: 188927740
effective search space used: 188927740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 50 (24.2 bits)