GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000987-TA|BGIBMGA000987-PA|undefined
         (62 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094838-1|AAM11191.1| 1351|Drosophila melanogaster LD47350p pro...    29   0.58 
AJ430588-1|CAD23206.1| 1354|Drosophila melanogaster shavenbaby p...    29   0.58 
AE014298-699|AAF46001.2| 1351|Drosophila melanogaster CG6824-PB,...    29   0.58 

>AY094838-1|AAM11191.1| 1351|Drosophila melanogaster LD47350p
          protein.
          Length = 1351

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 12/15 (80%), Positives = 13/15 (86%)

Query: 1  MPKIFWIKKRLHEQQ 15
          MPKIF IK RLH+QQ
Sbjct: 1  MPKIFLIKNRLHQQQ 15


>AJ430588-1|CAD23206.1| 1354|Drosophila melanogaster shavenbaby
          protein.
          Length = 1354

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 12/15 (80%), Positives = 13/15 (86%)

Query: 1  MPKIFWIKKRLHEQQ 15
          MPKIF IK RLH+QQ
Sbjct: 1  MPKIFLIKNRLHQQQ 15


>AE014298-699|AAF46001.2| 1351|Drosophila melanogaster CG6824-PB,
          isoform B protein.
          Length = 1351

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 12/15 (80%), Positives = 13/15 (86%)

Query: 1  MPKIFWIKKRLHEQQ 15
          MPKIF IK RLH+QQ
Sbjct: 1  MPKIFLIKNRLHQQQ 15


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.324    0.138    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,413
Number of Sequences: 52641
Number of extensions: 32730
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 3
length of query: 62
length of database: 24,830,863
effective HSP length: 43
effective length of query: 19
effective length of database: 22,567,300
effective search space: 428778700
effective search space used: 428778700
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)