GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000986-TA|BGIBMGA000986-PA|undefined
         (155 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   0.97 
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   1.3  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   3.0  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   6.8  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    25   6.8  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    25   6.8  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    24   9.0  

>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 104 NLLKEAGTCAVAKMKIIEWKLSHAGWWVK 132
           N L++AG+ A+A  K  + K   + WWV+
Sbjct: 626 NTLQQAGSLALASSKAWDSKTVISAWWVR 654


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 69  LVYDSQNTELFEEEAEQSRLMMAVSAGQERMSSYFNLLKEAGTCAVAKMKIIE 121
           L Y S+  E FE   ++S L  AVSAG++R       L +   C +    + E
Sbjct: 357 LPYISELDEPFEIFNKKSELFAAVSAGEDRRGLVQFWLNQVELCKIIHRMLTE 409


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 33  LGTQHLSEAFGCFMGFRFQQPNPSNIIVENESSRFALVYDSQNTELFEE 81
           L    L EA  CF     +Q N   ++ +   + F LV   ++ E+F++
Sbjct: 340 LAQYKLREALNCFQSLPIEQQNTPFVLAKLGITYFELVDYEKSEEVFQK 388


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 31  PELGTQHLSEAFGCFMGFRFQQPN-PSNIIVENESSRFALVY 71
           PE+    L  +  C + F F     P N ++EN   RF+ +Y
Sbjct: 268 PEVFVSGLVYSPDCNVAFTFSNTKGPRNFVLENHLVRFSSLY 309


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 53  PNPSNIIVENESSRFALVYDSQNTELFEEEAEQSRLMMAVSAGQERMSSYFNLLKEAGT 111
           P+  N+I  + S R +   D +      EEA +S L + +    + + S F+ +++  +
Sbjct: 97  PSKMNVITIDLSLRSSSTADEKLISQLGEEAHESLLKVHIEKANKHLFSLFSRVEDTSS 155


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 36  QHLSEAFGCFMGFRFQQPNPSNIIVENESSRFALVY 71
           Q+L+   GC MG  F+      ++V ++ S+ A+ Y
Sbjct: 271 QYLAPFSGCAMGEWFRDNGKHGLVVYDDLSKQAVAY 306


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 82  EAEQSRLMMAVSAGQERMSSYFNLLKEA 109
           E  +  L+  + A  E +S YF+LLKEA
Sbjct: 642 EPIEKLLLGMLDADVETVSEYFHLLKEA 669


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.132    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 616,074
Number of Sequences: 5004
Number of extensions: 21037
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 7
length of query: 155
length of database: 2,362,478
effective HSP length: 67
effective length of query: 88
effective length of database: 2,027,210
effective search space: 178394480
effective search space used: 178394480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)