GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000986-TA|BGIBMGA000986-PA|undefined
         (155 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0190 - 11350497-11350832,11351926-11352303,11353897-113541...    27   5.1  
08_02_1382 + 26565137-26565210,26565330-26565468,26565489-265656...    27   6.8  
08_02_1137 + 24623967-24623991,24625815-24625831,24626100-246262...    27   9.0  
08_02_0047 + 11600207-11601010,11601130-11601426                       27   9.0  

>11_03_0190 -
           11350497-11350832,11351926-11352303,11353897-11354181,
           11354515-11355327
          Length = 603

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 69  LVYDSQNTELFEEEAEQSRLMMAVSAGQER-MSSYFNLLKEAGTCAVAKMKIIE-WKL 124
           +V  + +  L E +   + +MM V+ G++R  + + +L K AGT   +  KI++ W+L
Sbjct: 402 IVNGAPSGPLLEAQLLINVVMMVVTKGRQRDENEWRDLFKTAGTAGFSDYKIVKNWEL 459


>08_02_1382 +
          26565137-26565210,26565330-26565468,26565489-26565603,
          26565761-26565828,26565907-26566551,26566927-26567031,
          26567115-26567465
          Length = 498

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 54 NPSNIIVENESSRFALVYDSQNTELFEEEAEQSRLMMAVS 93
          NP  + V+N S   A +  + NT LF       RL+ ++S
Sbjct: 22 NPPRVTVDNTSDMTATLVKASNTSLFLVLDNSCRLIQSIS 61


>08_02_1137 +
           24623967-24623991,24625815-24625831,24626100-24626216,
           24626399-24626440,24627246-24629705
          Length = 886

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 82  EAEQSRLMMAVSAGQERMSSYFNLLKEAGTCAVAKMKIIEWKLSHAGWWVKKQQHDFLP 140
           EAE+ R    + + +E+    F  +K      V  + +I+   S   WW  K  HDF+P
Sbjct: 411 EAEKER--GRIRSFEEQEFDAFQRVKRELFRDVPYLLVIDNLESERDWWEGKDLHDFIP 467


>08_02_0047 + 11600207-11601010,11601130-11601426
          Length = 366

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 69  LVYDSQNTELFEEEAEQSRLMMAVSAGQER-MSSYFNLLKEAG 110
           +V  S + ++FE +     LMM +++G+ER    +  +  +AG
Sbjct: 304 IVVGSPSKDMFEAQVSFDLLMMVITSGKERDQHEWHKIFMDAG 346


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.132    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,892,698
Number of Sequences: 37544
Number of extensions: 129322
Number of successful extensions: 273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 4
length of query: 155
length of database: 14,793,348
effective HSP length: 76
effective length of query: 79
effective length of database: 11,940,004
effective search space: 943260316
effective search space used: 943260316
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)