GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000986-TA|BGIBMGA000986-PA|undefined
         (155 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43025| Best HMM Match : Phage_fiber (HMM E-Value=0.35)              28   4.0  
SB_31088| Best HMM Match : CAP_GLY (HMM E-Value=2.2e-37)               27   5.3  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            27   5.3  
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)                  27   9.2  
SB_28008| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_43025| Best HMM Match : Phage_fiber (HMM E-Value=0.35)
          Length = 568

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 90  MAVSAGQERMSSYFNLLKEAG--TCAVAKMKIIEWKLSHAGWWVKKQQHDFLPC 141
           +A++   + ++     L++ G  TC V    ++E+   H+G +    QHD   C
Sbjct: 419 IALNCDVQNVAETMRELRDVGSNTCPVRPESVLEFLRKHSGMFAAGMQHDSQEC 472


>SB_31088| Best HMM Match : CAP_GLY (HMM E-Value=2.2e-37)
          Length = 947

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 51 QQPNPSNII--VENESSRFALVYDSQNTELFEEEAEQSRLMMAVSAGQER 98
          +QP  SN I  VE  S  F LV     TE+     E+++L+ A+ + +ER
Sbjct: 48 EQPEDSNKIALVETTSENFKLV--CATTEVARITEEEAKLLSAIVSAEER 95


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 17/65 (26%), Positives = 29/65 (44%)

Query: 56  SNIIVENESSRFALVYDSQNTELFEEEAEQSRLMMAVSAGQERMSSYFNLLKEAGTCAVA 115
           S+I+V+  S   A V   + T LF+ E ++   +      Q   SS +N  +   TC   
Sbjct: 74  SSIVVQGGSHEIAAVIADEGTPLFKNELKRLSSLTIDGHSQCFFSSEYNSQRLRSTCDQV 133

Query: 116 KMKII 120
            + +I
Sbjct: 134 LVTVI 138


>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
          Length = 1799

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 55  PSNIIVENESSRFALVYDSQNTELFEEEAEQSRLMMAVSAGQERMSSYFNLLK 107
           P+ +  +N SSR    + S       +EAE +  +++  A  E    YF  LK
Sbjct: 902 PTTVSAQNSSSRGRESFSSNTIVSSHDEAEDTDDLLSYEAALEGDLKYFRQLK 954


>SB_28008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/69 (20%), Positives = 30/69 (43%)

Query: 42  FGCFMGFRFQQPNPSNIIVENESSRFALVYDSQNTELFEEEAEQSRLMMAVSAGQERMSS 101
           F CF     +   P  + +E+ES RFA + + +   +  E+ ++ +     +   E + +
Sbjct: 7   FPCFSREERENVVPMAMFLESESRRFANLSEKELESILSEKQKRQKRQQTATLVNEMLDT 66

Query: 102 YFNLLKEAG 110
               +K  G
Sbjct: 67  QLLQMKRNG 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.132    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,383,128
Number of Sequences: 59808
Number of extensions: 138114
Number of successful extensions: 246
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 5
length of query: 155
length of database: 16,821,457
effective HSP length: 76
effective length of query: 79
effective length of database: 12,276,049
effective search space: 969807871
effective search space used: 969807871
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)