GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000986-TA|BGIBMGA000986-PA|undefined
         (155 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024876-12|AAF60896.2|  498|Caenorhabditis elegans Hypothetical...    27   4.5  
Z82264-11|CAB05155.2|  262|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z81147-1|CAB03531.1|  325|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AC024876-12|AAF60896.2|  498|Caenorhabditis elegans Hypothetical
          protein Y94H6A.1 protein.
          Length = 498

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 64 SSRFALVYD-SQNTELFEEEAEQSRLMMAVSAGQERM 99
          SS+FA  Y  SQ+++ FE+   +S  + A S+G+ R+
Sbjct: 16 SSQFASYYQYSQSSQFFEQMLRESSEIRAPSSGESRI 52


>Z82264-11|CAB05155.2|  262|Caenorhabditis elegans Hypothetical
           protein C49C3.5 protein.
          Length = 262

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 71  YDSQNTELFEEEAEQSRLMMAVSAGQERMSSYFNLLKEAGTCAVAKMKIIEW 122
           + S+  ELFE+E E    + A+  G+ R+  Y  L+++ G   + + KI +W
Sbjct: 166 FRSEAVELFEKEYETMLQLEAIGGGKVRI-PYTELVEKTG---MERKKIRDW 213


>Z81147-1|CAB03531.1|  325|Caenorhabditis elegans Hypothetical
           protein T09E11.1 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 13/100 (13%)

Query: 46  MGFRFQQPNPSNIIVENESSRFALVY-----DSQNTELFEEEAEQSRLMMAVSAGQERMS 100
           M  +F + N S I+  N   R  +VY     +S +  LF +     R +   + G++  S
Sbjct: 117 MALKFIRENTSRIL--NTDLREGVVYFADDDNSYDLRLFNDFIRNVRKLGVWAVGKQAAS 174

Query: 101 -----SYFNLLKEAGTCAVAKMKIIEWKL-SHAGWWVKKQ 134
                S+F  L  AG  AV   K+++ K+ S    WV K+
Sbjct: 175 QNTDHSFFVYLGFAGGAAVEAPKVVDKKVTSFDALWVSKR 214


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.132    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,327
Number of Sequences: 27539
Number of extensions: 113213
Number of successful extensions: 268
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 3
length of query: 155
length of database: 12,573,161
effective HSP length: 76
effective length of query: 79
effective length of database: 10,480,197
effective search space: 827935563
effective search space used: 827935563
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)