GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000986-TA|BGIBMGA000986-PA|undefined
         (155 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive eff...    31   0.35 
At3g12390.1 68416.m01544 nascent polypeptide associated complex ...    30   0.81 
At5g18070.1 68418.m02120 phosphoglucosamine mutase-related simil...    29   1.9  
At1g75730.1 68414.m08797 expressed protein                             27   4.3  

>At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 839

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 38  LSEAFGCFMGFRFQQPNPSNIIVENESSRFAL-VYDSQNTELFEEEAEQSRLMMAVSAGQ 96
           L + F  F G+  Q+       +EN   ++   VY+ +  E  EEEAE+  +++ +    
Sbjct: 340 LGKLFSPFSGW-MQRLESLIQFLENPEGKYERHVYELEEVERMEEEAERQEVVVNIPTIG 398

Query: 97  ERMSSYFN-LLKEAGTCAV 114
           E +   FN L +E  TC V
Sbjct: 399 EFVKKNFNSLSEEVETCIV 417


>At3g12390.1 68416.m01544 nascent polypeptide associated complex
           alpha chain protein, putative / alpha-NAC, putative
           similar to alpha-NAC, non-muscle form [Mus musculus]
           GI:1666690; contains Pfam profiles PF01849: NAC domain,
           PF00627: UBA/TS-N domain
          Length = 203

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 49  RFQQPNPSNIIVENESSRFALVYDSQNTELFEEEAEQSRLMMAVSAGQERMSSYFNLLKE 108
           +F+ P+ SN+I + ESS  A+V D +  +    E +   L+M   AG  R ++   L   
Sbjct: 132 QFKAPDLSNVISKGESSSAAVVQDDEEVDEEGVEPKDIELVM-TQAGVSRPNAVKALKAA 190

Query: 109 AGTCAVAKMKI 119
            G    A M++
Sbjct: 191 DGDIVSAIMEL 201


>At5g18070.1 68418.m02120 phosphoglucosamine mutase-related similar
           to SP|Q9P4V2 Phosphoacetylglucosamine mutase (EC
           5.4.2.3) (PAGM) (Acetylglucosamine phosphomutase)
           (N-acetylglucosamine-phosphate mutase) {Candida
           albicans}; contains Pfam profiles PF00408:
           Phosphoglucomutase/phosphomannomutase C-terminal domain,
           PF02878: Phosphoglucomutase/phosphomannomutase
           alpha/beta/alpha domain I
          Length = 556

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 8/101 (7%)

Query: 34  GTQHLSEAFGCF-MGFRFQQPNPSNIIVENESSRFALVYDSQNTELFEEEAEQSRLMMAV 92
           G +HL E    F +G  F+  N    I+ +ES    LV  S+  +L  +    S    AV
Sbjct: 368 GVKHLHEKAAEFDIGIYFEA-NGHGTILFSESFLSWLV--SKQKDLTAKGQGGSEEHKAV 424

Query: 93  SAGQERMSSYFNLLKEAGTCAVAKMKIIEWKLSHAGWWVKK 133
           S    R+ +  NL+ +A   A++ + ++E  L H GW ++K
Sbjct: 425 S----RLMAVSNLINQAVGDALSGVLLVEVILQHLGWSIEK 461


>At1g75730.1 68414.m08797 expressed protein
          Length = 589

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 36  QHLSEAFGCFMGFRFQQPNPSNIIVENESSRFALVYDSQNTEL 78
           QH        M    Q  NPS  ++  +   F L+Y+   T L
Sbjct: 539 QHRLMTAAAAMSMSHQHNNPSRAVMNRQEHHFPLIYEDTRTPL 581


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.132    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,204,047
Number of Sequences: 28952
Number of extensions: 109292
Number of successful extensions: 248
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 4
length of query: 155
length of database: 12,070,560
effective HSP length: 75
effective length of query: 80
effective length of database: 9,899,160
effective search space: 791932800
effective search space used: 791932800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)