Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000985-TA|BGIBMGA000985-PA|undefined
(261 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 28 1.2
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 28 1.6
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ... 27 2.1
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 3.6
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 27 3.6
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 27 3.6
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 3.6
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 27 3.6
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ... 26 4.8
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 26 4.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 6.3
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 26 6.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 8.4
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 25 8.4
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 71 LEDLIYDNVQLLTDDD-------IGIVVDL---RQRKDYLEHICDKLQKAEKYRDKDDTK 120
LEDLI D + L+ D I I++ L R +D L H +L K+ +KDD +
Sbjct: 312 LEDLITDVIPFLSSSDFDVCEKAISIIMGLVSSRNVEDILNHFQKELTKSNGETEKDDGR 371
Query: 121 KECL 124
+ L
Sbjct: 372 RRAL 375
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 27.9 bits (59), Expect = 1.6
Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 124 LELLNLALHYAEEGKGILWLAEKFFLASIAVGSQYLVDGGRQ-------KGCCKYHYAKF 176
L+LL + A G I L +KF + Y V G K C YHY+
Sbjct: 176 LDLLCASCGMALRGYYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYHYSTL 235
Query: 177 LLDKCADTDEP-FEMLTEVRDSAIGKIW--PLH 206
+C D P EV + + + W P H
Sbjct: 236 FAARCCGCDGPILRQFVEVYRNGVSQNWHVPCH 268
>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 339
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 39 LDAKSIRRRKLPLHECLILELRES-GYTESSDYLEDLIYDNVQLL 82
L K R K+PL + I E++ES + + + +LE + Y+ V+LL
Sbjct: 28 LKLKLSHRNKIPLKQSSIEEIKESYNFHDLASFLE-VYYEGVELL 71
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 26.6 bits (56), Expect = 3.6
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 1 MEFNKDLPKKRQLPKLMACMTKTSLENLRNKALFNLDTLDAKSIRRRKLPLHECLILELR 60
+EF + ++R L L ++S++++ N N ++ + + L + +L L
Sbjct: 415 LEFQSSVSEQRDL--LYQEQIQSSIKDMENVFRKNEYLMEELNELKNNLEVESSKVLRLD 472
Query: 61 ESGYTESSDYLEDLIYDNVQLLTDDDIGIVVDLRQRKDYLE 101
E + L +D V LTD+ G+ DL+ K L+
Sbjct: 473 EEMKCLKDEQLSQ--FDTVFSLTDERDGLQKDLKNTKGNLD 511
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 130 ALHYAEEGKGILWLAEKFFLASIAVGSQ-YLVDGGRQKGCCKYHYAKFLLDKC 181
ALH E GKG + F + SQ YL+DG + + F LD+C
Sbjct: 32 ALHSIETGKGAAYFVPDGFTPILIPNSQSYLLDGNSAQ-LPRPQPISFTLDQC 83
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 130 ALHYAEEGKGILWLAEKFFLASIAVGSQ-YLVDGGRQKGCCKYHYAKFLLDKC 181
ALH E GKG + F + SQ YL+DG + + F LD+C
Sbjct: 32 ALHSIETGKGAAYFVPDGFTPILIPNSQSYLLDGNSAQ-LPRPQPISFTLDQC 83
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 64 YTESSDYLEDLIYDNVQLLTDDDIGIVVDLRQRKDYLEHICDKLQKAEKYRDKDDTKKEC 123
Y + ++ + + + ++ L + +DL ++KD E+ C+KL + + K T +E
Sbjct: 121 YIDQTEQQKVVAANAIEELYQKKTALEIDLSEKKDAYEYSCNKLNSYMR-QTKKMTGRE- 178
Query: 124 LELLNLALHYA 134
L+ NL + A
Sbjct: 179 LDKYNLKIRQA 189
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 25 LENLRNKALFNLDTLDAKSIRRRKLPLHECLILELRESGYTES 67
+ ++ + F LD + +SI++R L E L E G+TES
Sbjct: 538 VSEVQEPSSFTLDDSNTESIKKRFDSLKEEAKANLEEQGFTES 580
>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 83 TDDDIGIVVDLRQ-------RKDYLEHICDKLQKAEKYRDKDDTKKECLELL--NLALHY 133
TD D+ IV DL R ++ + + +K + + + D +++ + + ++Y
Sbjct: 210 TDTDVKIVNDLCSFVPKDWVRDEFFDTLKEKKKSCKGFSFDDLLRRDLKQYFPDGIVVNY 269
Query: 134 AEEGKGILWLAEK 146
A GKG+ W+ +K
Sbjct: 270 ASVGKGLDWIKKK 282
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 137 GKGI-LWLAEKFFLASIAVGSQYLVDG 162
GKG+ LWL+ L+S+ + ++ L+DG
Sbjct: 723 GKGLKLWLSFSEILSSVLINTKNLIDG 749
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 6.3
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 3 FNKDL-PKKRQLPKLMACMTKTSLENLRNKALFNLDTLDA----KSIRRRKLPL----HE 53
F+KDL P R L K++ S EN+R+ A + + A K IRR + + +
Sbjct: 884 FHKDLLPILRLLFKVLMTSAFVS-ENIRSVATYIIYASQATGKSKPIRRSSVSIAVDRSD 942
Query: 54 CLILELRESGYTESSDYLEDLIYDN 78
+ ++ESGY ++++ LI N
Sbjct: 943 SNYISIKESGYAICEEFIDLLIKSN 967
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.8 bits (54), Expect = 6.3
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 6 DLPKKRQLPKLMACMTKTSLENLRNKALFNLDTLDA--KSIRRRKLPLH-ECLILELRES 62
D+ + ++ +T+L R+K N+ A K + + H ECLI + E+
Sbjct: 105 DIEAENSKDPVIKMNVQTTLPAYRSKLYKNVRRTHAEFKKFAKYLISTHPECLIPAVPEA 164
Query: 63 GYTESSDYLEDLIY 76
+ SS EDLIY
Sbjct: 165 KTSVSSGIKEDLIY 178
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 8.4
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 25 LENLRNKALFNLDTLDAKSIRRRKLPLH-ECLILELRESGYTES-SDYLEDLIYDNVQLL 82
L N+++ +L TL +S+ L EC I +S ES D L + N +L
Sbjct: 1634 LSNIKDSLSEDLRTL--RSLEDSVASLQKECKI----KSNTVESLQDVLTSVQARNAEL- 1686
Query: 83 TDDDIGIVVD-LRQRKDYLEHICDKLQK 109
+D++ VD +R+R D EH+ KL+K
Sbjct: 1687 -EDEVSRSVDKIRRRDDRCEHLSGKLKK 1713
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 8.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 1 MEFNKDLPKKRQLPKLMAC 19
+E ++ PKK+Q P+L C
Sbjct: 43 IELDRTTPKKKQFPRLFVC 61
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.136 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,201,816
Number of Sequences: 5004
Number of extensions: 51517
Number of successful extensions: 160
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 14
length of query: 261
length of database: 2,362,478
effective HSP length: 71
effective length of query: 190
effective length of database: 2,007,194
effective search space: 381366860
effective search space used: 381366860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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