Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000985-TA|BGIBMGA000985-PA|undefined
(261 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 32 0.40
10_08_0066 + 14610220-14610798,14610928-14611287 29 3.8
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 29 5.0
03_04_0065 + 16984736-16984835,16984932-16985369,16985511-169856... 29 5.0
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41... 29 5.0
07_03_0632 - 20112297-20116562 28 6.6
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 28 6.6
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879 28 6.6
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 28 8.7
05_04_0433 - 21181713-21183998 28 8.7
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 32.3 bits (70), Expect = 0.40
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 70 YLEDLIYDNVQL--LTDDDIGIVVDLRQRKDYLEHICDKLQKAEKYRDKDDTKKECLELL 127
Y+ L+ D +++ L D + IV D R L H C+ + K ++KD K +C+ LL
Sbjct: 780 YIVSLVPDGLEIPRLRDRLVKIVTDYRTETS-LRHGCNDILKVN-IQEKDILKADCVNLL 837
Query: 128 NLALHYAEEG 137
H A G
Sbjct: 838 VKYYHEARRG 847
>10_08_0066 + 14610220-14610798,14610928-14611287
Length = 312
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 9 KKRQLPKLMACMTKTSLENLRNKALFNLDTLDAKSIRRRKLPLHECLILELRESGYTESS 68
+K + C+ T+ + + KA+F+L ++ S+ E R GY S
Sbjct: 72 EKAEYMAFFLCLDDTASKGVEAKAIFSLLDMEGNSVSSHSFTTRVVNFSEERSWGY---S 128
Query: 69 DYLEDLIYDNVQLLTDDDIGIVVDLRQRKDYLE 101
++++ + + L DD I +D+ D+ E
Sbjct: 129 EFMKRGSLEKSEYLKDDCFKIRIDVSVIADFHE 161
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 104 CDKLQ-KAEKYRDKDDTKKECLELLNLALHYAEEGKGILWLAEKFF 148
C++++ K KY DD +K CLE LN ++ +E + + ++F+
Sbjct: 252 CERMEPKDSKYITLDDGRKLCLECLNTSIMDTDECQPLYIDIQEFY 297
>03_04_0065 +
16984736-16984835,16984932-16985369,16985511-16985635,
16985747-16985881,16985954-16986012,16986082-16986843,
16986973-16987118,16987151-16987251
Length = 621
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 177 LLDKCADTDEPFEMLTEVRDSAIGKIWPLHEPDSDNEDVPSETLFSATAMQL 228
+LD+ A +D E++ E+ D + PL E D+D+EDV + AM L
Sbjct: 510 VLDQGAASDARKEVMEEIGDLG-ESVLPLFEEDADDEDVQQRGQPESLAMIL 560
>02_01_0055 +
410661-411380,411481-413733,414486-414875,414983-418153
Length = 2177
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 77 DNVQLLTDDDIGIVVDLRQRKDYLEHICDKLQKAEKYRDKDDTKKE 122
D + DDDIG+ V+ + +D E D++Q + D+DD E
Sbjct: 211 DGMDTALDDDIGVAVEFEENEDDEESDFDQVQD-DLDEDEDDDLPE 255
>07_03_0632 - 20112297-20116562
Length = 1421
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 8 PKKRQLPKLMACMTKTSLENLRNKALFNLDTLDAKSIRRRKLPLHECLILELRESGYTES 67
P+K + + +T +++NL + +LD K R L LH+ ++ L + + E
Sbjct: 1188 PQKEEFMHTLQYLTDLTMDNLSQSS--DLDNFLCKLSALRTLCLHKIDVISLHQEKWLEQ 1245
Query: 68 SDYLEDLIYDNVQLL 82
L++L + LL
Sbjct: 1246 ITSLQELEFSCCYLL 1260
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 28.3 bits (60), Expect = 6.6
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 35 NLDTLDAKSIRRRKLPLHECLILELRESGYTESSDYLEDLIYDNVQLLTDDDIGIV-VDL 93
N+ L+ R+ H L+ ES Y + + EDL +N++ D D+
Sbjct: 339 NVADLEKNLASEREKIQHSSQTLKEMESVYNKHAKRQEDL-ENNMKSCKDQFKEFERKDV 397
Query: 94 RQRKDYLEHICDKLQKAEKYRDKDDTK 120
+ R+D L+H+ K++K E +KD +K
Sbjct: 398 KYRED-LKHLKQKIKKLEDKTEKDTSK 423
>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
Length = 696
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 73 DLIYDNVQLLTDDDIGIVVDLRQRKDYLEHICDKLQKAEKYRDKDDTKKECLELLN 128
D Y + L DD I + + E KL K+ + ++ D KK+ +E +N
Sbjct: 555 DFEYKEAEKLKDDSTDIYLTNMNQPKKKESALSKLWKSSRPKNNDVCKKDAVETIN 610
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 104 CDKLQKAE-KYRDKDDTKKECLELLNLALHYAEEGKGILWLAEKFF 148
C++++ + KY DD +K CLE LN ++ E + + ++FF
Sbjct: 359 CERMEPMDIKYITLDDGRKLCLECLNSSIMDTPECQQLYMDIQEFF 404
>05_04_0433 - 21181713-21183998
Length = 761
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 18 ACMTKTSLENLR-NKALFNLDTLDAKSIRRRKLPLHECLILELRESGYTESSDYLEDLI 75
A +T LE LR ++ + DA+++RR E L + G E+S+Y ED+I
Sbjct: 84 ARVTADELEKLRGSRGFVSCYPDDARAVRRDTTHTPEFLGVSASSGGLWEASEYGEDVI 142
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.136 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,407,564
Number of Sequences: 37544
Number of extensions: 315956
Number of successful extensions: 750
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 11
length of query: 261
length of database: 14,793,348
effective HSP length: 81
effective length of query: 180
effective length of database: 11,752,284
effective search space: 2115411120
effective search space used: 2115411120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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