GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000985-TA|BGIBMGA000985-PA|undefined
         (261 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52197| Best HMM Match : TPR_2 (HMM E-Value=6.6e-10)                 31   0.72 
SB_46684| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_50338| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)               29   2.9  
SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_34185| Best HMM Match : DegS (HMM E-Value=0.45)                     29   3.8  
SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_20769| Best HMM Match : Exo_endo_phos (HMM E-Value=0.022)           29   3.8  
SB_43804| Best HMM Match : Abhydrolase_1 (HMM E-Value=3.5e-06)         29   5.1  
SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_51317| Best HMM Match : E-MAP-115 (HMM E-Value=0.58)                29   5.1  
SB_31408| Best HMM Match : ENTH (HMM E-Value=0)                        29   5.1  
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)                   28   6.7  
SB_4154| Best HMM Match : FYRC (HMM E-Value=0.00011)                   28   6.7  
SB_26857| Best HMM Match : Viral_NABP (HMM E-Value=2.6)                28   8.9  
SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)                 28   8.9  
SB_58520| Best HMM Match : RVT_1 (HMM E-Value=0.035)                   28   8.9  

>SB_52197| Best HMM Match : TPR_2 (HMM E-Value=6.6e-10)
          Length = 536

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 7/155 (4%)

Query: 55  LILELRESGYTESSDYLEDLIY----DNVQLLTDDDIGIVVDLRQRKDYLEHICDKLQKA 110
           L L++   G+ +S   L +L+     +  +L  D  +   V L +  D L+ +   L  A
Sbjct: 75  LCLDMLRDGFHQSFCELFNLMRQQREEQERLGPDSGLANQVLLEEDADKLDQLKYHLTTA 134

Query: 111 EKYRDKDDTKKECLELLNLALHYAEEGKGILWLAEKFFLASIAVGSQYLVDGGRQKGCCK 170
           E  + +         LL LA ++ + G    WL++ F+ + +    +   DG R++    
Sbjct: 135 EAAKRRGKMDHVYSSLLALAQYFEQSGDA--WLSDHFYSSCLKTSLKIRGDGRRKESEAN 192

Query: 171 YHYAKFLLDKCADTDEPFEMLTEVRDSAIGKIWPL 205
            +     L+K  D  +  E      +   G+IW +
Sbjct: 193 CNVG-LSLEKKGDLHKAAEYFESFYNLTKGRIWQM 226


>SB_46684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 64 YTESSDYLEDLIYDNVQLLTDDDIGIVVDL 93
          +TE SDYLE ++  N QL+   D  I  DL
Sbjct: 49 FTELSDYLETIVLCNEQLVVVGDFNIHADL 78


>SB_50338| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)
          Length = 374

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 48  KLPLHECLILELRESGYTESSDYLEDLIYDNVQLLTDDDIGIVVDLRQRKDYLEHICDKL 107
           KLP HE  I     SG+    + L+ L   + QL  +  + I+++  QR D +EHIC ++
Sbjct: 310 KLP-HEYYIQLDVPSGHLPGENLLDALNSYDPQLKLEQFV-IILEKVQRNDMVEHICKEM 367

Query: 108 QKAE 111
              E
Sbjct: 368 APKE 371


>SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 71  LEDLIYDNVQLLTDDDIGIVVDLRQRKDYLEHICDKLQKAEKYRDKDDTKKECLELLN 128
           L+DL Y    ++ + D G  V +  +  Y++ +  +L   E Y++  D  +   EL+N
Sbjct: 897 LKDLRYAKDIVIKEADKGFGVVVMDKDKYIQEVLRQLSDKEVYKETKDLTQYITELVN 954


>SB_34185| Best HMM Match : DegS (HMM E-Value=0.45)
          Length = 348

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 107 LQKAEKYRDKDDTKKECLELLNLALHYAEEGKGILWLAEKFFLASIAVGSQYLVDGGRQK 166
           L +A++ ++K +  K+C  LL   L  +E G       EK       V  Q L + GR +
Sbjct: 158 LDRAKEIKEKCEELKQCKILLEKDLKRSETGADC---KEKGREELENVEKQ-LNERGRNE 213

Query: 167 GCCKYHYAKFLLDKCADTDEPFEMLTEVRDSAIGKIWPLHEPDSD 211
              K  Y  FLL  C    +  + L E++   I K   +H  D++
Sbjct: 214 AAVKGEYQDFLLKNCQALIQVHKPLHELKQQIIKK--RIHVSDTE 256


>SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1319

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 64  YTESSDYLEDLIYDNVQLLTDDDIGIVVDL 93
           +TE SDYLE ++    QL+   D  I VDL
Sbjct: 763 FTELSDYLETIVLCKEQLVVVGDFNIHVDL 792


>SB_20769| Best HMM Match : Exo_endo_phos (HMM E-Value=0.022)
          Length = 396

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 64  YTESSDYLEDLIYDNVQLLTDDDIGIVVDL 93
           +TE SDYLE ++    QL+   D  I VDL
Sbjct: 205 FTELSDYLETIVLCKEQLVVVGDFNIHVDL 234


>SB_43804| Best HMM Match : Abhydrolase_1 (HMM E-Value=3.5e-06)
          Length = 414

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 138 KGILWLAEKFFLASIAVG-SQYLVDGGRQKGCC---KYHYAKFLLDKCADTDEPF 188
           K I W A    + S+AV  S Y +  GR+       K  + KFLLD C+  +EPF
Sbjct: 12  KLIEWQAFSVTIGSLAVCLSYYYLCIGRKPQLVAGPKSKFTKFLLDHCSILEEPF 66


>SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 803

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 71  LEDLIYDNVQLLTDDDIGIVVDLRQRKDYLEHICDKLQKAEKYRDKDDTKKECLELLN 128
           L+DL Y    ++ + D G  V +  +  Y++ +  +L   E Y++  D  +   EL+N
Sbjct: 494 LKDLRYAKDIVIKEADKGSGVVVMDKDKYIQEVLRQLSDKEVYKETKDLTQYITELVN 551


>SB_51317| Best HMM Match : E-MAP-115 (HMM E-Value=0.58)
          Length = 696

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 22  KTSLENLRNKALFNLDTLDAK--SIRRRKLPLHECLILELRESGYTESSDYLEDLIYDNV 79
           KT+ ENLR +    L  +     +I+     L +CL    +E+   E  +Y      + +
Sbjct: 435 KTASENLRAELSIVLQRMQVSKNTIQTLSEDLKKCL--REKEALIVEREEYQGQGNDEEL 492

Query: 80  QLLTDDDIGIVV--DLRQRKDYLEHICDKLQKAEKYRDKD 117
           + + +   G  V  D+ Q+K  +E + +KL+KA+   DK+
Sbjct: 493 RRVEERLKGYRVEHDVNQKKTLIEELRNKLRKAQSMEDKE 532


>SB_31408| Best HMM Match : ENTH (HMM E-Value=0)
          Length = 1080

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 138 KGILWLAEKFFLASIAVG-SQYLVDGGRQKGCC---KYHYAKFLLDKCADTDEPF 188
           K I W A    + S+AV  S Y +  GR+       K  + KFLLD C+  +EPF
Sbjct: 12  KLIEWQAFSVTIGSLAVCLSYYYLCIGRKPQLVAGPKSKFTKFLLDHCSILEEPF 66


>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
          Length = 648

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 122 ECLELLNLALHYAEEGKGILWLAEKFFLASIAVGSQYLVD----GGRQKGCCKYHYAKFL 177
           EC+   ++A++ +  G+   W A  F   +     + LVD        K  C  H+A+ L
Sbjct: 83  ECVTAGSMAVYASRAGQHTCWHASCFICTTC---KELLVDLIYFYKDSKVYCGRHHAETL 139

Query: 178 LDKCADTDEPF--EMLTEVRDS 197
             +CA  DE    E  TE  DS
Sbjct: 140 KPRCAACDEIIFAEQCTEAEDS 161


>SB_4154| Best HMM Match : FYRC (HMM E-Value=0.00011)
          Length = 231

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 157 QYLVDG--GRQKGCCKYHYAKFLLDKCADTDEPFEMLTEV 194
           QYL+    G +K C KY + KF L K  +   PF  + +V
Sbjct: 81  QYLIQNLPGARK-CSKYQWVKFELPKAQNKQAPFRRVPQV 119


>SB_26857| Best HMM Match : Viral_NABP (HMM E-Value=2.6)
          Length = 526

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 22  KTSLENLRNKALFNLDTLDAKSIRRRKLP-LHECLILELRESGYTESSDYLEDLIYDN 78
           KT    +R  A +  D +  +  +RRKL  L     LE+    YTE   ++  L+YD+
Sbjct: 180 KTCTITIRPAAPWYCDNIRKEKAKRRKLKALWRKTRLEVHRQMYTEQCVHVNKLLYDS 237


>SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)
          Length = 566

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 100 LEHICDKLQKAEKYRDKDDTKKECLELLNLALHYAEEGKGIL 141
           L HI DK+ KA+ YR++D T+    +L+++   Y + G  IL
Sbjct: 196 LLHIQDKVLKAKLYREEDLTRN---KLVDIVTTYNDRGALIL 234


>SB_58520| Best HMM Match : RVT_1 (HMM E-Value=0.035)
          Length = 556

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 22  KTSLENLRNKALFNLDTLDAKSIRRRKLP-LHECLILELRESGYTESSDYLEDLIYDN 78
           KT    +R  A +  D +  +  +RRKL  L     LE+    YTE   ++  L+YD+
Sbjct: 149 KTCTITIRPAAPWYCDNIRKEKAKRRKLKALWRKTRLEVHRQMYTEQCVHVNKLLYDS 206


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.136    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,673,342
Number of Sequences: 59808
Number of extensions: 371987
Number of successful extensions: 920
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 913
Number of HSP's gapped (non-prelim): 18
length of query: 261
length of database: 16,821,457
effective HSP length: 81
effective length of query: 180
effective length of database: 11,977,009
effective search space: 2155861620
effective search space used: 2155861620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)