GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000985-TA|BGIBMGA000985-PA|undefined
         (261 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97016-2|ABC71840.1|  216|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U97016-1|ABC71839.1|  234|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81103-2|CAB03213.1|  403|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    30   1.9  
Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical p...    29   3.3  
AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z75553-4|CAA99946.1|  389|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z81103-1|CAB03208.2|  457|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z66513-13|CAI46602.1|  492|Caenorhabditis elegans Hypothetical p...    28   7.7  
Z66513-12|CAA91332.3|  427|Caenorhabditis elegans Hypothetical p...    28   7.7  

>U97016-2|ABC71840.1|  216|Caenorhabditis elegans Hypothetical
           protein B0261.4b protein.
          Length = 216

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 27/128 (21%), Positives = 62/128 (48%), Gaps = 7/128 (5%)

Query: 5   KDLPKKRQLPKLMACMTKT-SLENLRNKALFNLDTLDAKSIRRRKLPLHECLILELRESG 63
           +++P   +L ++   M +  S+ + RN A+F L+T ++ + R+R +        + + + 
Sbjct: 91  RNMPNPERLDRVHETMDRIESVVHERNDAVFRLETGESAAPRKRTITSFAGFTYQKQATE 150

Query: 64  YTESSDYLEDLIYDNVQLLTDDDIGIVVDLRQRKDYL---EHICDKLQKAEKYRDKDDTK 120
           +  +   L    Y+   L  DDD  ++  L Q K+++   + + D+ ++A +  D D  K
Sbjct: 151 HF-APPQLGQKEYETPYL--DDDAYVMQKLWQEKEFMKNRDRLDDEKRRAARTEDMDRFK 207

Query: 121 KECLELLN 128
           +    + N
Sbjct: 208 RGAPRVFN 215


>U97016-1|ABC71839.1|  234|Caenorhabditis elegans Hypothetical
           protein B0261.4a protein.
          Length = 234

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 27/128 (21%), Positives = 62/128 (48%), Gaps = 7/128 (5%)

Query: 5   KDLPKKRQLPKLMACMTKT-SLENLRNKALFNLDTLDAKSIRRRKLPLHECLILELRESG 63
           +++P   +L ++   M +  S+ + RN A+F L+T ++ + R+R +        + + + 
Sbjct: 109 RNMPNPERLDRVHETMDRIESVVHERNDAVFRLETGESAAPRKRTITSFAGFTYQKQATE 168

Query: 64  YTESSDYLEDLIYDNVQLLTDDDIGIVVDLRQRKDYL---EHICDKLQKAEKYRDKDDTK 120
           +  +   L    Y+   L  DDD  ++  L Q K+++   + + D+ ++A +  D D  K
Sbjct: 169 HF-APPQLGQKEYETPYL--DDDAYVMQKLWQEKEFMKNRDRLDDEKRRAARTEDMDRFK 225

Query: 121 KECLELLN 128
           +    + N
Sbjct: 226 RGAPRVFN 233


>Z81103-2|CAB03213.1|  403|Caenorhabditis elegans Hypothetical
           protein M04G12.1b protein.
          Length = 403

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 14  PKLMACMTKTSLENLRNKA-LFNLDT--LDAKSIRRRKLPLHECLILELRESGYTESSDY 70
           P ++A     SL ++   A L    T  + A +    KLP  +C + +L    +   +DY
Sbjct: 9   PSMLAAPNAVSLASVNGSASLLTATTAGMKANNNSNEKLPRQQCYLCDLPRWPWAIINDY 68

Query: 71  LEDLIYDNVQLLTDDDIGIVVDLRQRKDYLE--HICDKLQKAEKYRDKDDTKKECLELL 127
           +E +    V     D I +V++  +++  L+   I D        RD   T+++ L+ L
Sbjct: 69  IEPVCRGCVNYEGSDRIELVLEETRQQKKLQGVGISDPQNAKTSLRDITLTQQQPLQTL 127


>U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical
           protein W05H9.2 protein.
          Length = 851

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 43  SIRRRKLPLHECLILELRESGYTESSDYLEDLIYDNVQLLTDDDIGIVVDLRQRKDYLEH 102
           SI  R++   +CL +      Y E    L D    N+Q LTDD    V +L +R DY  +
Sbjct: 94  SILERRVTFDQCLFIS---KNYAEKRAQLAD----NIQNLTDDLWSKVPELNKRLDYANY 146

Query: 103 I 103
           +
Sbjct: 147 V 147


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
            see also lmb-protein 2 protein.
          Length = 1535

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 37   DTLDAKSIRRRKLPLHECLILELRESG---YTES---SDYLEDLIYDNVQLLTDDDIGIV 90
            D +DA+  RR  LP+ +  +++ R+S      E+   +D  +D+I+ +V    D    + 
Sbjct: 1406 DIIDAQDKRRNSLPIDKQFVIDYRKSADVLLNETHALADRYKDIIHSDVD-TRDSTEAVQ 1464

Query: 91   VDLRQRKDYLEHICDKLQKAEKYRDKD 117
             D+ Q  + L    + LQ  +K  + D
Sbjct: 1465 YDIEQLMEELTDSNENLQYYKKQAEDD 1491


>Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical
           protein T08A11.2 protein.
          Length = 1322

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/62 (30%), Positives = 27/62 (43%)

Query: 183 DTDEPFEMLTEVRDSAIGKIWPLHEPDSDNEDVPSETLFSATAMQLHRVLLTKARSIRKS 242
           DTD    +  E RDS +  I    E D D + +PS    S    Q H+ +   A +   +
Sbjct: 47  DTDVYGSVRGENRDSYLDSIGTGEEDDVDEDSMPSVQKKSTNYAQPHKFIEEVAAASEDT 106

Query: 243 DP 244
           DP
Sbjct: 107 DP 108


>Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical
           protein T08A11.2 protein.
          Length = 1322

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/62 (30%), Positives = 27/62 (43%)

Query: 183 DTDEPFEMLTEVRDSAIGKIWPLHEPDSDNEDVPSETLFSATAMQLHRVLLTKARSIRKS 242
           DTD    +  E RDS +  I    E D D + +PS    S    Q H+ +   A +   +
Sbjct: 47  DTDVYGSVRGENRDSYLDSIGTGEEDDVDEDSMPSVQKKSTNYAQPHKFIEEVAAASEDT 106

Query: 243 DP 244
           DP
Sbjct: 107 DP 108


>AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical
           protein K12B6.8 protein.
          Length = 714

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 1   MEFNKDLPKKRQLPKLMACMTKTSLENLRNKALFNLDTLDAKSIRRRKLPLHECLILELR 60
           ME +K    K ++   +      ++  LRN+    + T   KS + +KL  + C  +E  
Sbjct: 108 MESDKFFLLKNEIFLFIQTTLIKNMPALRNRVTLIMLTYFLKS-QEKKLGTY-CEFVEYF 165

Query: 61  ESGYTESSDYLEDLIYDNVQLLTDDDIGIVVDLR 94
           E    + ++ L++LI D    + D ++G+  D+R
Sbjct: 166 ERDIIKLNEELDELIEDCTMSIDDLELGVASDIR 199


>Z75553-4|CAA99946.1|  389|Caenorhabditis elegans Hypothetical
           protein ZC443.4 protein.
          Length = 389

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/48 (27%), Positives = 29/48 (60%)

Query: 89  IVVDLRQRKDYLEHICDKLQKAEKYRDKDDTKKECLELLNLALHYAEE 136
           +V +L + K Y E +  ++++AEK R++DD   +  E++   +  A++
Sbjct: 218 VVNELSEVKKYCEILKAQMEEAEKRREEDDVANKLNEVVEKLISTAKD 265


>Z81103-1|CAB03208.2|  457|Caenorhabditis elegans Hypothetical
           protein M04G12.1a protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 15  KLMACMTKTSLENLRNKA-LFNLDT--LDAKSIRRRKLPLHECLILELRESGYTESSDYL 71
           +++A     SL ++   A L    T  + A +    KLP  +C + +L    +   +DY+
Sbjct: 37  QMLAAPNAVSLASVNGSASLLTATTAGMKANNNSNEKLPRQQCYLCDLPRWPWAIINDYI 96

Query: 72  EDLIYDNVQLLTDDDIGIVVDLRQRKDYLE--HICDKLQKAEKYRDKDDTKKECLELL 127
           E +    V     D I +V++  +++  L+   I D        RD   T+++ L+ L
Sbjct: 97  EPVCRGCVNYEGSDRIELVLEETRQQKKLQGVGISDPQNAKTSLRDITLTQQQPLQTL 154


>Z66513-13|CAI46602.1|  492|Caenorhabditis elegans Hypothetical
           protein F54D5.5b protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 64  YTESSDYLEDLIYDNVQLLTDDDIGIVVDLRQRKDYLEHICDKLQKA-EKYRDKDDTKKE 122
           Y+    + ED I ++      +     V  R ++ Y++   +  QK  E+ R   D +KE
Sbjct: 223 YSSRHSHYEDRIEESENDDFSEKAQFAVIERAQQHYMQKYKESEQKRREEKRKLKDMEKE 282

Query: 123 CLELLNLALHYAEE 136
           C +  N   HY  +
Sbjct: 283 CNDAKNAMFHYMNQ 296


>Z66513-12|CAA91332.3|  427|Caenorhabditis elegans Hypothetical
           protein F54D5.5a protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 64  YTESSDYLEDLIYDNVQLLTDDDIGIVVDLRQRKDYLEHICDKLQKA-EKYRDKDDTKKE 122
           Y+    + ED I ++      +     V  R ++ Y++   +  QK  E+ R   D +KE
Sbjct: 158 YSSRHSHYEDRIEESENDDFSEKAQFAVIERAQQHYMQKYKESEQKRREEKRKLKDMEKE 217

Query: 123 CLELLNLALHYAEE 136
           C +  N   HY  +
Sbjct: 218 CNDAKNAMFHYMNQ 231


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.136    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,419,393
Number of Sequences: 27539
Number of extensions: 279677
Number of successful extensions: 781
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 12
length of query: 261
length of database: 12,573,161
effective HSP length: 80
effective length of query: 181
effective length of database: 10,370,041
effective search space: 1876977421
effective search space used: 1876977421
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)