GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000985-TA|BGIBMGA000985-PA|undefined
         (261 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.69 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.7  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 178 LDKCADTDEPFEMLTEVRDSAIGKIWPLHEPDSDNEDVPSET 219
           L K    DE  E  ++ R  +I + W L    + +ED+   T
Sbjct: 191 LSKSPPNDEGIETDSDRRKGSIARCWSLDSTAASDEDISLTT 232


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 32  ALFNLDTLDAKSIRRRKLPLHECLILELRESGYTESSDYLEDLIYDNVQLLTD 84
           ++ NLD L  +S+    +PLH+    +L        +DY    +  N++LLTD
Sbjct: 316 SVMNLDDLTRRSLYLSDIPLHDA-TRDLVLMSEQFEADY---KLTRNLELLTD 364


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 32  ALFNLDTLDAKSIRRRKLPLHECLILELRESGYTESSDYLEDLIYDNVQLLTD 84
           ++ NLD L  +S+    +PLH+    +L        +DY    +  N++LLTD
Sbjct: 316 SVMNLDDLTRRSLYLSDIPLHDA-TRDLVLMSEQFEADY---KLTRNLELLTD 364


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,020
Number of Sequences: 429
Number of extensions: 2563
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 261
length of database: 140,377
effective HSP length: 56
effective length of query: 205
effective length of database: 116,353
effective search space: 23852365
effective search space used: 23852365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)