Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000984-TA|BGIBMGA000984-PA|undefined
         (71 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)               26   3.6  
SB_46444| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  25   8.4  
SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1)                     25   8.4  

>SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)
          Length = 783

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 37  ATSMFAKSIKSDKSTNARTILAKESSKDSK 66
           AT+    S +S++STN + I AKE   DS+
Sbjct: 277 ATTNLLPSNQSEQSTNGKAIEAKEVFSDSR 306


>SB_46444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 42  AKSIKSDKSTNARTILAKESSKDSKQ 67
           A   K+DK   +R   ++ESSKD++Q
Sbjct: 95  ANKSKADKKPQSRHSKSRESSKDTRQ 120


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 36   KATSMFAKSIKSDKSTNARTILAKESSKDSKQ 67
            +A  +    +  DKS  A+T LA E++K +K+
Sbjct: 1157 RAVKLLGTGLGVDKSETAKTNLAHEANKPTKK 1188


>SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1)
          Length = 210

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 43  KSIKSDKSTNARTILAKESSKDSKQFVEK 71
           KS +  KS+ ++T   KE+ K+SK+  +K
Sbjct: 77  KSAEKSKSSKSKTPAKKETKKESKKSPKK 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.302    0.111    0.263 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,168,101
Number of Sequences: 59808
Number of extensions: 18206
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 4
length of query: 71
length of database: 16,821,457
effective HSP length: 50
effective length of query: 21
effective length of database: 13,831,057
effective search space: 290452197
effective search space used: 290452197
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 52 (25.0 bits)