GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000984-TA|BGIBMGA000984-PA|undefined
         (71 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0368 + 2884425-2885069,2885215-2885301                           25   7.5  

>01_01_0368 + 2884425-2885069,2885215-2885301
          Length = 243

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 37 ATSMFAKSIKSDKSTNARTILAKESSKDSKQFV 69
          A S  A S+K    TNA+ +L  E+SKD   F+
Sbjct: 2  AASTTALSMKLLVDTNAQRVLFAEASKDVVDFL 34


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.302    0.111    0.263 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 864,993
Number of Sequences: 37544
Number of extensions: 12827
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 1
length of query: 71
length of database: 14,793,348
effective HSP length: 51
effective length of query: 20
effective length of database: 12,878,604
effective search space: 257572080
effective search space used: 257572080
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 51 (24.6 bits)