GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000984-TA|BGIBMGA000984-PA|undefined
         (71 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81531-4|CAB04318.1|  285|Caenorhabditis elegans Hypothetical pr...    28   0.70 
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    27   1.6  

>Z81531-4|CAB04318.1|  285|Caenorhabditis elegans Hypothetical
          protein F36D3.4 protein.
          Length = 285

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 9  KKTKENSEADMVXXXXXXXXXXXXXXXKATSMFAKSIKSDKSTNARTILAKESSKDSKQ 67
          KK+K+ S +                  K   MF KS KS K ++ ++  +K+SSK  K+
Sbjct: 31 KKSKKGSASK--SSRASSKSRRSSKSNKGPGMFGKSGKSGKPSHGKSSKSKKSSKSEKK 87


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 43  KSIKSDKSTNARTILAKESSKDSKQFVEK 71
           KS+K  K  N      K SSK++KQ +EK
Sbjct: 952 KSVKQLKDVNEHICGEKISSKEAKQLIEK 980


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.302    0.111    0.263 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 933,041
Number of Sequences: 27539
Number of extensions: 16706
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 2
length of query: 71
length of database: 12,573,161
effective HSP length: 51
effective length of query: 20
effective length of database: 11,168,672
effective search space: 223373440
effective search space used: 223373440
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 51 (24.6 bits)