GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000984-TA|BGIBMGA000984-PA|undefined
         (71 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   3.4  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    19   4.5  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    19   4.5  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    19   4.5  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    19   4.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    19   4.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    19   4.5  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    19   4.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    19   6.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   6.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   7.9  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 38  TSMFAKSIKSDKSTNARTILA 58
           T +F   +  D+STN   +L+
Sbjct: 344 TMVFCNDLSIDRSTNTMYVLS 364


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
          determiner protein.
          Length = 177

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 43 KSIKSDKSTNARTILAKESSKDSKQ 67
          KS K++ S       +KE S+D K+
Sbjct: 48 KSYKNENSYRKYRETSKERSRDRKE 72


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
          determiner protein.
          Length = 177

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 43 KSIKSDKSTNARTILAKESSKDSKQ 67
          KS K++ S       +KE S+D K+
Sbjct: 48 KSYKNENSYRKYRETSKERSRDRKE 72


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
          determiner protein.
          Length = 176

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 43 KSIKSDKSTNARTILAKESSKDSKQ 67
          KS K++ S       +KE S+D K+
Sbjct: 48 KSYKNENSYRKYRETSKERSRDRKE 72


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
          determiner protein.
          Length = 177

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 43 KSIKSDKSTNARTILAKESSKDSKQ 67
          KS K++ S       +KE S+D K+
Sbjct: 48 KSYKNENSYRKYRETSKERSRDRKE 72


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
          determiner protein.
          Length = 178

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 43 KSIKSDKSTNARTILAKESSKDSKQ 67
          KS K++ S       +KE S+D K+
Sbjct: 48 KSYKNENSYRKYRETSKERSRDRKE 72


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 43  KSIKSDKSTNARTILAKESSKDSKQ 67
           KS K++ S       +KE S+D K+
Sbjct: 281 KSYKNENSYRKYRETSKERSRDRKE 305


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 43  KSIKSDKSTNARTILAKESSKDSKQ 67
           KS K++ S       +KE S+D K+
Sbjct: 281 KSYKNENSYRKYRETSKERSRDRKE 305


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 19.0 bits (37), Expect = 6.0
 Identities = 6/19 (31%), Positives = 13/19 (68%)

Query: 50  STNARTILAKESSKDSKQF 68
           + NAR+++ K   ++ K+F
Sbjct: 158 NANARSVVEKMRKENGKEF 176


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.0 bits (37), Expect = 6.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 38  TSMFAKSIKSDK 49
           + +FAK +K DK
Sbjct: 692 SKLFAKKVKKDK 703


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 44   SIKSDKSTNARTILAKES 61
            S  +DK TNA    +KE+
Sbjct: 995  SANNDKDTNAVVTQSKEA 1012


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.302    0.111    0.263 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9825
Number of Sequences: 429
Number of extensions: 211
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 71
length of database: 140,377
effective HSP length: 45
effective length of query: 26
effective length of database: 121,072
effective search space:  3147872
effective search space used:  3147872
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (18.9 bits)
S2: 36 (18.6 bits)