GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000984-TA|BGIBMGA000984-PA|undefined
         (71 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29060.1 68415.m03532 scarecrow transcription factor family p...    25   4.7  
At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containi...    25   6.1  

>At2g29060.1 68415.m03532 scarecrow transcription factor family
           protein 
          Length = 1336

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 10  KTKENSEADMVXXXXXXXXXXXXXXXKATSMFAKSIKSDKSTNARTILAKE--SSKDSKQ 67
           + K+N E D                 K T MF K +  D   + +T+L  E  + + SK 
Sbjct: 878 RVKKNHERDFEEVRSSKQFASNVEDSKVTDMFDKVLLLDGECDPQTLLDSEIQAIRSSKN 937

Query: 68  FVEK 71
             EK
Sbjct: 938 IGEK 941


>At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 700

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 37  ATSMFAKSIKSDKSTNARTILAKESSKDSKQF 68
           +TS+F   +K D+  +AR +  +  SKD K +
Sbjct: 301 STSVFDMYVKCDRLESARRVFDQTRSKDLKSW 332


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.302    0.111    0.263 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 859,042
Number of Sequences: 28952
Number of extensions: 14848
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 2
length of query: 71
length of database: 12,070,560
effective HSP length: 51
effective length of query: 20
effective length of database: 10,594,008
effective search space: 211880160
effective search space used: 211880160
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 51 (24.6 bits)