Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000981-TA|BGIBMGA000981-PA|IPR003599|Immunoglobulin
subtype, IPR002345|Lipocalin, IPR009057|Homeodomain-like,
IPR004875|CENP-B protein
         (1260 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    27   0.61 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    27   1.1  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    26   1.9  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    25   3.3  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          25   3.3  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    24   7.5  

>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 27.5 bits (58), Expect = 0.61
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 751 TPEKEEIRREYENRLKRTKAKQVKKRLDGGKT 782
           TP+ EE++R   + LK + AK   K+  G KT
Sbjct: 56  TPDGEELKRVLPDALKTSCAKCTDKQKQGAKT 87


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 995  QHPNGTQYTPVPRSDDSDDSLFWYAGESLQTGDCGISFSYAT--DEDSGEWTCHMG 1048
            Q+PN T Y     + DS   LFW    +         +S A     D    +CH G
Sbjct: 86   QYPNPTYYNLADPARDSRKGLFWSPAATAAATATEYKYSAAAPGPSDPSVSSCHQG 141


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 254 GYKAHNRVFTREQELELSKYLIRCADIYFGLTKKDVMKLAYELTVKYNL--SRPRTWDDN 311
           GY A N+   R +    ++  +   +  FG T+   + +  E+ +K NL  SR + W  N
Sbjct: 60  GYPAGNQRKQRRERTTFTRAQLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKN 119

Query: 312 GMA 314
             A
Sbjct: 120 RRA 122


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 620 TPPTSPSILTLEPQEEMEELSNEALLVQQPTENMPQCSQVLDKEQ 664
           TP TSP+  ++ PQ      S      Q      P  SQV+ K++
Sbjct: 150 TPKTSPNEASMSPQSTSSNNSASPKACQFLYNQFPGSSQVVVKDE 194


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 620 TPPTSPSILTLEPQEEMEELSNEALLVQQPTENMPQCSQVLDKEQ 664
           TP TSP+  ++ PQ      S      Q      P  SQV+ K++
Sbjct: 170 TPKTSPNEASMSPQSTSSNNSASPKACQFLYNQFPGSSQVVVKDE 214


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 751 TPEKEEIRREYENRLKRTKAKQVKKRLDG 779
           TPE EE++R+    L+   AK  +K  +G
Sbjct: 54  TPEGEELKRDIPEALQNECAKCNEKHKEG 82


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 286,394
Number of Sequences: 317
Number of extensions: 12440
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 8
length of query: 1260
length of database: 114,650
effective HSP length: 65
effective length of query: 1195
effective length of database: 94,045
effective search space: 112383775
effective search space used: 112383775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)