Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000981-TA|BGIBMGA000981-PA|IPR003599|Immunoglobulin
subtype, IPR002345|Lipocalin, IPR009057|Homeodomain-like,
IPR004875|CENP-B protein
(1260 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 32 0.58
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 31 1.0
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 31 1.3
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 1.3
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 30 2.4
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 30 2.4
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 30 2.4
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 29 3.1
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 29 4.1
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po... 29 5.4
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 29 5.4
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha... 28 7.2
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 28 7.2
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 9.5
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 28 9.5
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 28 9.5
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 28 9.5
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 31.9 bits (69), Expect = 0.58
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 807 YCVVCMSAYSESRPREKWIQCTVCKMWAHEECTQ 840
+C+ C + Y+ QC +C+ W HE+C Q
Sbjct: 122 FCI-CDTVYNPETEEGTMFQCILCEDWFHEKCLQ 154
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 31.1 bits (67), Expect = 1.0
Identities = 27/106 (25%), Positives = 49/106 (46%)
Query: 949 SPYNLGSRIMNEVNEDSIASRTIFVQRDMGFTITCRAEVSLSYCWFQHPNGTQYTPVPRS 1008
S Y L + V+EDSIA++T V ++ ++ R ++ + VPR+
Sbjct: 371 SLYFLPRPSSSSVSEDSIAAQTKDVYDEVANLLSKRGVKEWKSRVSKYKYAFELEDVPRT 430
Query: 1009 DDSDDSLFWYAGESLQTGDCGISFSYATDEDSGEWTCHMGPRRQMG 1054
D + ++ Y+ +L T G SFS+ ++ + + RR MG
Sbjct: 431 ADYLEVIYSYSYPALPTDLTGSSFSHVFGTNTALFEQFVLSRRVMG 476
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 1210 EKIRSYWKKTDSSSRTDNVSLQTFSAASWRKDSDSSGSANGSQKAGSRDIS 1260
EKIR KK S+S + + + F SW D+S +++ A D+S
Sbjct: 294 EKIRETKKKNSSTSLSPDPTSDNFEWGSWVSSQDTSKNSSNLASASVDDVS 344
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 617 EDKTPPTSPSILTLEPQEEMEELSNEALLVQQPTENMPQCSQVLDKEQENIIA 669
+ + PP PS++ + ++EELS + + + + M +C + L + N++A
Sbjct: 1082 DSQMPPVKPSLIHSRNKIDLEELSGQKFMSEYEIDVMTRCLKDLKLLRSNLMA 1134
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 307 TWDDNGMAGEEWFRMFMKRNSELSVRAAQATS--LSRATSFNRKNVDAFYDNLANVMDRY 364
+W+ AGE ++ F+ R S LSV S S +T + +N+ + +L M Y
Sbjct: 274 SWNPTNNAGEIEYKTFLGRISSLSVFTQDVASRYFSNSTERSAQNISSSISSLKLTMSTY 333
Query: 365 KFEPQNIYN 373
+ I+N
Sbjct: 334 QDVLFQIFN 342
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 806 CYCVVCMSAYSESRPREKWIQCTVCKMWAHEECTQVESLDTGYVQDTNAKKLHLYCNILH 865
C C + S E+ +IQC C +W H C G+ ++ +++ YC I H
Sbjct: 51 CVCGIVESD-DEASDGGLYIQCDQCSVWQHGNC-------VGFADESEVPEVY-YCEICH 101
Query: 866 TQ 867
+
Sbjct: 102 PE 103
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 560 MPLALTQSNIQAGFRTTGIVPFNRHLFTELDFAPAFVTDRPNPLEAADGPIQNINTLEDK 619
+ + L QS Q TG + H+ +E + AP +PN L + P+Q+ K
Sbjct: 322 LSIHLMQSKNQGHVSMTGSDKLSSHVQSETENAPVSKPSKPNTLTEDEKPLQS-----TK 376
Query: 620 TPPTSPSI--LTLEPQE-EMEELSNEALLVQQPTENMPQCSQ 658
P S ++ L EP+ ++ ELS + ++ C++
Sbjct: 377 LPGNSLTVGELYQEPKSIQLPELSVSRTTYSAQSSSVKNCNE 418
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 94 VQDEIPEYHPTPIALQDGERHAHVDLTTLNSAYCLVEQPFSDISFVPGHCSVTLDRTTR 152
++ IP P+P ++++G + D+T+L++ VE+ I + + S LDRT R
Sbjct: 60 LESAIPSLSPSP-SIENGSAMLNSDITSLSNRIFKVEEKLDLILSLLKNSSEPLDRTER 117
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 601 NPLEAADGPIQNINTLEDKTPPTSPSILTLEPQEEM-EELSNEALLVQQPTEN--MPQCS 657
NP+ + ++ + K S ++ L+ QE++ +E++ + LL QQ E + Q +
Sbjct: 162 NPITRPSKEVDSLENIVTKLDLESEDLMRLKKQEQLDDEIAKKYLLGQQEAEEPLVQQQT 221
Query: 658 QVLDKEQENI 667
+++ E+E +
Sbjct: 222 SIVNPEKEEV 231
>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 868 KNITFCRFQKITEHVGYNIMNGLSDGAHSYYGDGFEMRHCGMTVENPTE 916
+NI F + ++ T ++GY ++ + A+ GD + H G T ++ T+
Sbjct: 65 ENIDFSKLEEETINIGYPVLGVVHQLANLCSGDSGKYCHWGATTQDVTD 113
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 822 EKWIQCTVCKMWAHEECTQVESLDTGYVQDTNAKKLHLYCNILHTQKNIT 871
+ W+QC C W H C + D + ++ YC + H++ +++
Sbjct: 33 DTWVQCDGCDCWQHASCVGLADKD---IPES------YYCEVCHSRSDVS 73
>SPBC14F5.12c |cbh2||centromere binding protein
Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 349 NVDAFYDNLANVMDRYK-FEPQNIYNVDETGI 379
N + +N+ + + F+P++I+N+DETG+
Sbjct: 154 NQGTYEENMVQIQELISLFDPKDIFNMDETGL 185
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 841 VESLDTGYVQDTNAKKLHLYCNILHTQKNI 870
V+ L T + +D N + +HL C++L ++++
Sbjct: 638 VDMLFTSFSEDMNRESIHLICDVLKAKESV 667
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 501 NGIVMLSFPPHCSHKLQPLDRSVFGPLK--KAVNSTCDGWMRSHPGKTMTIYDIPGILTT 558
NG+ M S+ PH +H P S GP A NST M +H P + +
Sbjct: 365 NGLPMNSYTPHSNHLHSPSPNSNSGPTDSLSAPNSTSSPSM-AHANGASFASQYPSLNKS 423
Query: 559 AMPLALTQS 567
P + + S
Sbjct: 424 IFPASYSSS 432
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 1208 KREKIRSYWKKTDSSSRTDNVSLQTFSAASWRKDSDSSGSAN 1249
KR ++ S+ T +S + NV+ + + AS + DSS ++N
Sbjct: 204 KRSRLNSFNSSTSTSGSSSNVAAEVSNDASQPSNQDSSLNSN 245
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 744 KSTIYTDTPEKEEIRREYENRLKRTKAKQVKKRLDGGKTKTNARSRGKIKMHQ 796
KS ++ D E+EE+R+ E R K+ + ++ + D + + N +R + K ++
Sbjct: 442 KSEMFVDLSEEEEVRQYEEYRKKQKELQEELEFPDEVELQPNELARERFKKYR 494
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 817 ESRPREKWIQCTVCKMWAHEEC 838
E PR+ +I CT+C+ H +C
Sbjct: 1360 EFSPRDSFIDCTICERRFHYDC 1381
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.133 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,630,629
Number of Sequences: 5004
Number of extensions: 239883
Number of successful extensions: 673
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 26
length of query: 1260
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1179
effective length of database: 1,957,154
effective search space: 2307484566
effective search space used: 2307484566
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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