Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000981-TA|BGIBMGA000981-PA|IPR003599|Immunoglobulin
subtype, IPR002345|Lipocalin, IPR009057|Homeodomain-like,
IPR004875|CENP-B protein
(1260 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0) 54 1e-06
SB_16187| Best HMM Match : DDE (HMM E-Value=1.7e-31) 51 5e-06
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20) 44 8e-04
SB_36246| Best HMM Match : DDE (HMM E-Value=9.99967e-42) 42 0.003
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.005
SB_36636| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.007
SB_26272| Best HMM Match : DDE (HMM E-Value=5.7e-33) 40 0.013
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18) 36 0.27
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18) 36 0.27
SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12) 35 0.36
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.48
SB_33106| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.83
SB_28326| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.83
SB_53247| Best HMM Match : DDE (HMM E-Value=2.1e-08) 34 0.83
SB_16609| Best HMM Match : PHD (HMM E-Value=0.003) 33 1.5
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27) 32 2.5
SB_3251| Best HMM Match : I-set (HMM E-Value=1.8e-07) 32 2.5
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19) 32 3.4
SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08) 32 3.4
SB_47204| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.4
SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21) 31 5.9
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014) 31 7.8
>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
Length = 1595
Score = 53.6 bits (123), Expect = 1e-06
Identities = 65/276 (23%), Positives = 111/276 (40%), Gaps = 19/276 (6%)
Query: 263 TREQELELSKYLIRCADIYFGLTKKDVMKLAYELTVKYNLSRPRTWDD--NGMAGEEWFR 320
TRE E L ++ C F K LA E Y TW+ NG+ EEW+
Sbjct: 821 TREDEDRLISFINHCVSFGFKNYNKVTRMLAGEAAYWYG-----TWNLTLNGLPSEEWWD 875
Query: 321 MFMKRNSELSVRAAQATS-LSRATSFNRKNVDAFYDNLANVMDRYKFEPQNIYNVDETGI 379
F +N +A A S + + + +++F++ V++ +F ++ + E
Sbjct: 876 AFCHKNKHSLQKAVLAKSPVDPSQTEIDLCINSFFNKFHTVLEGSEFHKTSLVDCAEHIF 935
Query: 380 TTVQ-KPDRIIARRGARQ--VGSVTSAERGALVTXXXXXXXXXXXXPPFFVFPRVRYQDH 436
T + K D + G+ V + S +R V+ PP F++ V +
Sbjct: 936 TVCESKFDVHLMCAGSSDNFVPKLPSCDR--FVSTICCVSASGTSMPPMFIYHSVDGKQA 993
Query: 437 FVRDGPIGSAGSANP----SGWMQDESFMHFLDHFRKHTNASPSRKILLVLDNHSSHIHI 492
GP GS + S D F F D F K NA R ++L++D + + I
Sbjct: 994 MNAKGPAGSIHFDHKVYDFSRQGIDFYFPWFKDIFLK--NAPNVRPLVLLVDPNMAFITP 1051
Query: 493 NALDFCKTNGIVMLSFPPHCSHKLQPLDRSVFGPLK 528
+ N +++L P +H +QP+ +V L+
Sbjct: 1052 ELIKLAHENRVILLCLPELFTHIVQPISLTVLPALR 1087
>SB_16187| Best HMM Match : DDE (HMM E-Value=1.7e-31)
Length = 626
Score = 51.2 bits (117), Expect = 5e-06
Identities = 51/197 (25%), Positives = 76/197 (38%), Gaps = 11/197 (5%)
Query: 366 FEPQNIYNVDETGITTVQKPDRIIARRGARQVGSVTSAERGALVTXXXXXXXXXXXXPPF 425
++P+N++N+DETG PD + RG R G ++ +R T P
Sbjct: 207 WKPENVWNMDETGSFWKGLPDSSLNERGKRCNGGKSAKQRN---TWAFFANSTGEKEDPK 263
Query: 426 FVFPRVRYQDHFVRDGPIGSAGSANPSGWMQDESFMHFLDHFRKHTNASPSRKILLVLDN 485
+Q H + P +A P WM+ E L + SRKILL +DN
Sbjct: 264 QSRKAPMFQKH---EKP-QTAVWMLPKAWMKSEIMEEVLGRLNEKLKKK-SRKILLFMDN 318
Query: 486 HSSHIHINALDFCKTNGIVMLSFPPHCSHKLQPLDRSVFGPLKKAVNSTCDGWMRSHPGK 545
HI A F + I + P + + K QPLD + K ++ S
Sbjct: 319 APRHIQSLADSF---SNIAVKFLPKNTTSKTQPLDAGIIANWKAKYKKKLLRYVCSKVDG 375
Query: 546 TMTIYDIPGILTTAMPL 562
T DI + AM +
Sbjct: 376 EQTASDIAKGINVAMAI 392
>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
Length = 428
Score = 44.0 bits (99), Expect = 8e-04
Identities = 53/235 (22%), Positives = 85/235 (36%), Gaps = 25/235 (10%)
Query: 318 WFRMFMKRNSELSVRAAQATSLSRATSFNRKNVDAFYDNLANVMDRYKFEPQNIYNVDET 377
W F KR + RA N + V+++ + + + + +N++NVDET
Sbjct: 121 WLEKF-KRQHNIGQRAVSGEE----AGVNPETVESWKERAREITRGW--DAKNVWNVDET 173
Query: 378 GITTVQKPDRIIARRGARQVGSVTSAERGALVTXXXXXXXXXXXXPPFFVFPRVRYQDHF 437
G P++ + RG R G S +R T PP + R +F
Sbjct: 174 GCLWRGLPEKSLNERGMRCSGGKKSKQRN---TWAFFVNAAGENEPPIVIGRIYRTSRYF 230
Query: 438 VRDGPIGSAGSANPSGWMQDESFMHFLDHFRKHTNASPSRKILLVLDNHSSHIHINALDF 497
AN W++ E L + +R I+L +DN H +
Sbjct: 231 -----------ANDKAWIRTEIMQEVLAKLNRRLKRE-NRNIMLFMDNAPCHTPSLKNTY 278
Query: 498 CKTNGIVMLSFPPHCSHKLQPLDRSVFGPLKKAVNSTCDGWMRSHPGKTMTIYDI 552
C I+ LS + + K QPLD + K ++ S T+T DI
Sbjct: 279 CNIK-IIFLS--KNTTSKTQPLDSGIIANWKIHYKKRMLRFICSKVSATITASDI 330
Score = 32.3 bits (70), Expect = 2.5
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Query: 89 WSEVHVQDEI--PEYHPTPIALQDGERHAHVDLTTLNSAYCLVEQPFSDISFVPGHCSVT 146
W EV I P +P P +D +H +D Q F DI C +T
Sbjct: 347 WDEVQESTIIKCPNPNPNPFEEEDLVQHEQIDTMLAKLGAPCTAQEFLDIDANKPTCQLT 406
Query: 147 LDRTTRAVQGNWNVVLG 163
LDRT + +LG
Sbjct: 407 LDRTRADWRDQAREILG 423
>SB_36246| Best HMM Match : DDE (HMM E-Value=9.99967e-42)
Length = 454
Score = 41.9 bits (94), Expect = 0.003
Identities = 50/227 (22%), Positives = 86/227 (37%), Gaps = 21/227 (9%)
Query: 366 FEPQNIYNVDETGITTVQKPDRIIARRGARQVGSVTSAERGALVTXXXXXXXXXXXXPPF 425
++ +N++N+DETG P++ + RG R G S +R P
Sbjct: 225 WDAKNVWNMDETGCFWRGLPEKSLNERGMRCSGGKKSKQRNTWA----FFVNAAGEKEPL 280
Query: 426 FVFPRVRYQDHFV----RDGPIGSAGSANPSGWMQDESFMHFLDHFRKHTNASPSRKILL 481
V R F + P AN WM+ E L + +I+L
Sbjct: 281 IVIGRSENPSCFKNLPNKQYPYKCRYFANDKAWMRTEIMQKVLAKLNRRLKRE--NRIML 338
Query: 482 VLDNHSSHIHINALDFCKTNGIVMLSFPPHCSHKLQPLDRSVFGPLKKAVNSTCDGWMRS 541
++DN + H +L +N + ++ P + + K QPLD + K ++ S
Sbjct: 339 IMDN--APCHPPSLKNTYSN-VKIIFLPKNTTSKTQPLDSGIIANWKIHYKKRMLRFICS 395
Query: 542 HPGKTMTIYDIPGILTTAMPL--------ALTQSNIQAGFRTTGIVP 580
T+T DI + M + + +S I F++TG+ P
Sbjct: 396 EVSATITASDIVKSIDMLMSIEWGKQAWDEVQKSTIIKCFKSTGLYP 442
>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 41.1 bits (92), Expect = 0.005
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 450 NPSGWMQDESFMHFLDHFRKHTNASPSRKILLVLDNHSSHIHINALDFCKTNGIVMLSFP 509
N WM + ++ + +RKILL DN SH AL+ + I ++ +P
Sbjct: 217 NRKAWMTSPLYTEYILDLDRQMRLQ-NRKILLFEDNAPSH---GALEDIELTNIKVVFYP 272
Query: 510 PHCSHKLQPLDRSVFGPLK 528
P+ + +LQPLD+ + LK
Sbjct: 273 PNTTSRLQPLDQGIIKNLK 291
Score = 33.9 bits (74), Expect = 0.83
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 314 AGEEWFRMFM-KRNSELSVRAAQATSLSRATSFNRKNVDAFYDNLANVMDRYKFEPQNIY 372
A W F ++N SV + +++S+ T VD L + + Y+ E +I+
Sbjct: 116 ASNGWLESFKCRKNIHCSVLSGESSSVPTET------VDECQSRLEALCEGYRAE--DIF 167
Query: 373 NVDETGITTVQKPDRIIARRGA 394
N+DETG+ PDR + RGA
Sbjct: 168 NMDETGMYYRALPDRSLVVRGA 189
>SB_36636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 40.7 bits (91), Expect = 0.007
Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
Query: 449 ANPSGWMQDESFMHFLDHFRKHTNASPSRKILLVLDNHSSHIHINALDFCKTNGIVMLSF 508
+NP WM+ E L + SRKILL +DN HI A F + I +
Sbjct: 131 SNPKAWMKSEIMEEVLRRLNEKLKKK-SRKILLFMDNAPRHIQSLADSF---SNIAVKFL 186
Query: 509 PPHCSHKLQPLDRSVFGPLKKAVNSTCDGWMRSHPGKTMTIYDIPGILTTAMPL 562
P + + K QPLD + K ++ S T DI + AM +
Sbjct: 187 PKNTTSKTQPLDAGIIANWKAEYKKKLLRYICSKVDGEQTASDIAIGINVAMAI 240
>SB_26272| Best HMM Match : DDE (HMM E-Value=5.7e-33)
Length = 312
Score = 39.9 bits (89), Expect = 0.013
Identities = 33/121 (27%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Query: 442 PIGSAGSANPSGWMQDESFMHFLDHFRKHTNASPSRKILLVLDNHSSHIHINALDFCKTN 501
P G +NP WM+ E L + SRKILL +DN H A F +
Sbjct: 59 PYGCWYYSNPKAWMKSEIMEEVLGRLNEKLKKK-SRKILLFMDNAPCHPQSLADSF---S 114
Query: 502 GIVMLSFPPHCSHKLQPLDRSVFGPLKKAVNSTCDGWMRSHPGKTMTIYDIPGILTTAMP 561
I + P + + K QPLD + K ++ S T DI + AM
Sbjct: 115 NITVKFLPKNTTSKTQPLDAGIIANWKAKYRKKLLRYICSKVDGEQTASDIAKGVNVAMA 174
Query: 562 L 562
+
Sbjct: 175 I 175
>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
Length = 1284
Score = 35.5 bits (78), Expect = 0.27
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 807 YCVVCMSAYSESRPREKWIQCTVCKMWAHEECTQV 841
YC +C YS++ K + C C+ W H C +
Sbjct: 930 YCPICEKCYSDNDFDSKMMHCNDCQHWVHASCQNI 964
>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
Length = 458
Score = 35.5 bits (78), Expect = 0.27
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 807 YCVVCMSAYSESRPREKWIQCTVCKMWAHEECTQV 841
YC +C YS++ K + C C+ W H C +
Sbjct: 271 YCPICEKCYSDNDFDSKMMHCNDCQHWVHASCQNI 305
>SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)
Length = 652
Score = 35.1 bits (77), Expect = 0.36
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 811 CMSAYSESRPREKWIQCTVCKMWAHEECTQVESLDTGYVQDTNAKKLHLYC 861
C + + + IQC +C W H +CT + + Y TN + L+C
Sbjct: 149 CRNCLKVVKKNSRGIQCDICLEWFHLKCTVLSVKEYNYFSRTNDLWICLFC 199
>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6119
Score = 34.7 bits (76), Expect = 0.48
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 998 NGTQYTPVPRSDDSDDSLFWYAGESLQTGDCGISFSYATDEDSGEWTCHMGPRRQMGVEL 1057
NG + P + D LF + C + S AT ED GE+TC
Sbjct: 5898 NGNRMARPPETRSRKDLLFRFYVRKSPERCCHLCISCATIEDEGEYTCR-ASNPAGSCSC 5956
Query: 1058 TDKLVVRVTGPLAASQKEIPTVIDGSATLFCKTSNGNRP 1096
T +L+V + + V+ G TL C S P
Sbjct: 5957 TAELIVDAPAKVDQAATPGSGVVGGKITLTCLISGNPVP 5995
>SB_33106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 33.9 bits (74), Expect = 0.83
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 366 FEPQNIYNVDETGITTVQKPDRIIARRGARQVGSVTSAERGA 407
++P+N++N+DETG PD + RG R G ++ +R A
Sbjct: 172 WKPENVWNMDETGSFWKGLPDSSLNERGKRCNGGKSAKQRNA 213
>SB_28326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 33.9 bits (74), Expect = 0.83
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 449 ANPSGWMQDESFMHFLDHFRKHTNASPSRKILLVLDNHSSHIHINALDFCKTNGIVMLSF 508
AN W++ E L + +R I+L +DN + H +L +N I ++ F
Sbjct: 59 ANDKAWIRTEIMQEVLAKLNRRLKRE-NRNIMLFMDN--APCHPPSLKNTYSN-IKIIFF 114
Query: 509 PPHCSHKLQPLDRSVFGPLKKAVNSTCDGWMRSHPGKTMTIYDIPGILTTAMPL------ 562
P + + K QPLD + K ++ S T+T DI + M +
Sbjct: 115 PKNTTSKTQPLDSGIIANWKIHYKKRMLRFICSKVSATITATDIVKSIDVLMSIEWGKQA 174
Query: 563 --ALTQSNIQAGFRTTGIVP 580
+ +S I F++TG+ P
Sbjct: 175 WVEVQESYIIKCFKSTGLYP 194
>SB_53247| Best HMM Match : DDE (HMM E-Value=2.1e-08)
Length = 265
Score = 33.9 bits (74), Expect = 0.83
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 449 ANPSGWMQDESFMHFLDHFRKHTNASPSRKILLVLDNHSSHIHINALDFCKTNGIVMLSF 508
AN W++ E L + +R I+L +DN + H +L +N I ++ F
Sbjct: 59 ANDKAWIRTEIMQEVLAKLNRRLKRE-NRNIMLFMDN--APCHPPSLKNTYSN-IKIIFF 114
Query: 509 PPHCSHKLQPLDRSVFGPLKKAVNSTCDGWMRSHPGKTMTIYDIPGILTTAMPL------ 562
P + + K QPLD + K ++ S T+T DI + M +
Sbjct: 115 PKNTTSKTQPLDSGIIANWKIHYKKRMLRFICSKVSATITATDIVKSIDVLMSIEWGKQA 174
Query: 563 --ALTQSNIQAGFRTTGIVP 580
+ +S I F++TG+ P
Sbjct: 175 WVEVQESYIIKCFKSTGLYP 194
>SB_16609| Best HMM Match : PHD (HMM E-Value=0.003)
Length = 78
Score = 33.1 bits (72), Expect = 1.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 810 VCMSAYSESRPREKWIQCTVCKMWAHEEC 838
VC+ E RP ++ +QC C +W H C
Sbjct: 3 VCIECGKEVRPHQQVLQCDDCGLWQHRMC 31
>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
Length = 228
Score = 32.3 bits (70), Expect = 2.5
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 729 KAPPRKLTNRGRKTRKSTIYTDTPEKEEIRREYENRLKRTKAKQVKKRLDGGKTKTNARS 788
K K + G KT+KS T P+ ++++ + K TK K K+ T +
Sbjct: 119 KVKKPKKSRDGEKTKKSKKVTSEPKSPKVKKSKDKSTKTTKKSDAKSPKKDAKSPTTTKK 178
Query: 789 RGK 791
K
Sbjct: 179 TSK 181
>SB_3251| Best HMM Match : I-set (HMM E-Value=1.8e-07)
Length = 147
Score = 32.3 bits (70), Expect = 2.5
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 59 GCGVRVRNIIKEDEGRW--RLTATRGNYSITGWSEVHVQD--EIPEYHPTPIALQDGERH 114
G +RV+N+ K DEG + R+ + G+Y T W+++ +Q+ E ++ I Q
Sbjct: 4 GSLLRVKNVSKLDEGHYICRVANSNGDYVFTEWAKLSLQNPSETHQFSRPIITSQPEYPE 63
Query: 115 AHVDLTTLNSAYC 127
H L YC
Sbjct: 64 VHTVLGGTLRLYC 76
>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
Length = 1199
Score = 31.9 bits (69), Expect = 3.4
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 3 RGLGSPYELRVAKGHEALLKLNRELVNQQSCSVTTPKGVTFDVRQPPQNRYESWSDGCGV 62
R + PY+ ++ G + +NRE N++ T+P V VR QN YE
Sbjct: 62 RRVDEPYKSKIPVGPRRIPNVNRESKNEEEVRSTSP--VRDRVRGRKQNSYEVSPRKNAA 119
Query: 63 RVRNIIKE 70
+ RNI K+
Sbjct: 120 KSRNISKK 127
>SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)
Length = 410
Score = 31.9 bits (69), Expect = 3.4
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 12/139 (8%)
Query: 450 NPSGWMQDESFMHFLDHFRKHTNASPSRKILLVLDNHSSHIHINALDFCKTNGIVMLSFP 509
N WM+ E L + +R I+L +DN H +L +N I ++ P
Sbjct: 83 NDKAWMRTEIMQEVLAKLNRRLKRE-NRNIMLFMDN--GPCHPPSLKNTYSN-IKIIFLP 138
Query: 510 PHCSHKLQPLDRSVFGPLKKAVNSTCDGWMRSHPGKTMTIYDIPGILTTAMPL------- 562
+ + K QPLD + K ++ S T+T DI + M +
Sbjct: 139 KNTASKTQPLDSGIIANWKIHYKKRMLRFICSKVSATITASDIVKSIDVLMSIEWGKQAW 198
Query: 563 -ALTQSNIQAGFRTTGIVP 580
+ +S I F++TG+ P
Sbjct: 199 DEVQESTIIKCFKSTGLYP 217
>SB_47204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 31.5 bits (68), Expect = 4.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 813 SAYSESRPREKWIQCTVCKMWAHEECTQVE 842
+A +E R E + + T CK W H C Q+E
Sbjct: 96 TARNEKRSNELFAKSTSCKEWLHRACVQLE 125
>SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)
Length = 1080
Score = 31.1 bits (67), Expect = 5.9
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 808 CVVCMSAYSESRPREKWIQCTVCKMWAHEECTQVES 843
C VC A R ++ IQC C +W H +C Q+ +
Sbjct: 100 CGVCSKAV---RSNQRAIQCDFCDIWYHVKCMQMST 132
>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
Length = 598
Score = 30.7 bits (66), Expect = 7.8
Identities = 12/63 (19%), Positives = 27/63 (42%)
Query: 807 YCVVCMSAYSESRPREKWIQCTVCKMWAHEECTQVESLDTGYVQDTNAKKLHLYCNILHT 866
Y C + + +K IQC C W H +C + + + +++ + C++ +
Sbjct: 93 YRYPCGACLKPVKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSWICCACDVANF 152
Query: 867 QKN 869
K+
Sbjct: 153 SKS 155
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.133 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,508,017
Number of Sequences: 59808
Number of extensions: 1840077
Number of successful extensions: 4896
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4862
Number of HSP's gapped (non-prelim): 46
length of query: 1260
length of database: 16,821,457
effective HSP length: 91
effective length of query: 1169
effective length of database: 11,378,929
effective search space: 13301968001
effective search space used: 13301968001
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 66 (30.7 bits)
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