GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000981-TA|BGIBMGA000981-PA|IPR003599|Immunoglobulin
subtype, IPR002345|Lipocalin, IPR009057|Homeodomain-like,
IPR004875|CENP-B protein
         (1260 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    29   0.32 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    28   0.42 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    27   0.96 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           26   2.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    24   6.8  

>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 28.7 bits (61), Expect = 0.32
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 621 PPTSPSILTLEPQEEMEELSNEALLVQQPTENMPQCSQVLDKEQE 665
           PPT P+ L  E + E E  +N  + + QP    P+  +  + E E
Sbjct: 25  PPTRPTRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAE 69


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 0.42
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 621 PPTSPSILTLEPQEEMEELSNEALLVQQPTENMPQCSQVLDKEQE 665
           PPT P+ L  E + E E  +N  + + QP    P+  +  + E E
Sbjct: 24  PPTRPTRLRREAKPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAE 68


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 621 PPTSPSILTLEPQEEMEELSNEALLVQQPTENMPQCSQVLDKEQE 665
           PPT P+ L  E + E E  +N  + + QP    P+  +  + + E
Sbjct: 25  PPTRPARLRREAKPEAEPGNNRPIYIPQPRPPHPRLRREAEPKAE 69


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 1005 VPRSDDSDDSLFWYAGESLQTGDCGISFSYATD 1037
            +P+    +DSL+      ++  DCG + +Y +D
Sbjct: 297  IPKEQVKEDSLYTNIVVDIRNEDCGSAIAYVSD 329


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 836 EECTQVESLDTGYVQDTNAKKLHLYCNILHTQKNITFCRF 875
           ++C ++  LDTG + +    +  ++   LH  K IT  RF
Sbjct: 129 DKCGRLWILDTGILGEKQICRPKIHVFSLHDNKLITMYRF 168


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 363,646
Number of Sequences: 429
Number of extensions: 15943
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 1260
length of database: 140,377
effective HSP length: 66
effective length of query: 1194
effective length of database: 112,063
effective search space: 133803222
effective search space used: 133803222
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)