Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000981-TA|BGIBMGA000981-PA|IPR003599|Immunoglobulin
subtype, IPR002345|Lipocalin, IPR009057|Homeodomain-like,
IPR004875|CENP-B protein
(1260 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 35 0.30
At3g63500.2 68416.m07153 expressed protein 35 0.40
At3g63500.1 68416.m07152 expressed protein 35 0.40
At3g07780.1 68416.m00949 expressed protein 35 0.40
At3g11200.2 68416.m01359 PHD finger family protein contains Pfam... 34 0.69
At3g11200.1 68416.m01360 PHD finger family protein contains Pfam... 34 0.69
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-... 33 0.92
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam... 33 0.92
At1g14740.1 68414.m01762 expressed protein 33 0.92
At5g48160.1 68418.m05949 tropomyosin-related contains weak simil... 33 1.2
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai... 33 1.6
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam... 33 1.6
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 32 2.1
At5g20510.1 68418.m02437 PHD finger family protein contains Pfam... 31 3.7
At2g16270.1 68415.m01863 expressed protein and genefinder; expr... 31 3.7
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 31 4.9
At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f... 31 4.9
At5g26980.1 68418.m03219 syntaxin 41 (SYP41) / TLG2a identical t... 31 6.5
At5g01370.1 68418.m00050 expressed protein 31 6.5
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden... 31 6.5
At1g67220.1 68414.m07651 zinc finger protein-related similar to ... 31 6.5
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 30 8.5
At5g05610.2 68418.m00611 PHD finger family protein contains Pfam... 30 8.5
At5g05610.1 68418.m00610 PHD finger family protein contains Pfam... 30 8.5
At1g65070.1 68414.m07377 DNA mismatch repair MutS family protein... 30 8.5
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 35.1 bits (77), Expect = 0.30
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 807 YCVVCMSAYSESRPREKWIQCTVCKMWAHEECTQVESLDTGYVQDTNAKKLHLYC 861
YC VC+ Y +S + C +C+ W H C + D Y+Q KL C
Sbjct: 285 YCPVCLKVYRDSESTPM-VCCDICQRWVHCHCDGIS--DDKYMQFQVDGKLQYKC 336
>At3g63500.2 68416.m07153 expressed protein
Length = 1162
Score = 34.7 bits (76), Expect = 0.40
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 806 CYCVVCMSAYSESRPREKWIQCTVCKMWAHEECTQVES 843
C C+VC S + + W+ C VC W H +C ES
Sbjct: 836 CMCLVC-SNFDMASNTCSWVGCDVCLHWCHTDCGIKES 872
>At3g63500.1 68416.m07152 expressed protein
Length = 887
Score = 34.7 bits (76), Expect = 0.40
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 806 CYCVVCMSAYSESRPREKWIQCTVCKMWAHEECTQVES 843
C C+VC S + + W+ C VC W H +C ES
Sbjct: 561 CMCLVC-SNFDMASNTCSWVGCDVCLHWCHTDCGIKES 597
>At3g07780.1 68416.m00949 expressed protein
Length = 566
Score = 34.7 bits (76), Expect = 0.40
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 806 CYCVVCMSAYSESRPREKWIQCTVCKMWAHEEC 838
C CV+C + + + +WI C VC W H +C
Sbjct: 226 CMCVIC-NKFDFAVNTCRWIGCDVCSHWTHTDC 257
>At3g11200.2 68416.m01359 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 233
Score = 33.9 bits (74), Expect = 0.69
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 768 TKAKQVKKRLDGGKTKTNARSRGKIKMHQXXXXXXXXXCYCVVCMSAYSESRPREKWIQC 827
+K++ KR G+TK++ + + C C Y+ E WI C
Sbjct: 140 SKSRNGTKRSIDGQTKSSTPKLMEESYEEEEEEDEHGDTLCGSCGGHYTNE---EFWICC 196
Query: 828 TVCKMWAHEECTQV 841
VC+ W H +C ++
Sbjct: 197 DVCERWYHGKCVKI 210
>At3g11200.1 68416.m01360 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 246
Score = 33.9 bits (74), Expect = 0.69
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 768 TKAKQVKKRLDGGKTKTNARSRGKIKMHQXXXXXXXXXCYCVVCMSAYSESRPREKWIQC 827
+K++ KR G+TK++ + + C C Y+ E WI C
Sbjct: 153 SKSRNGTKRSIDGQTKSSTPKLMEESYEEEEEEDEHGDTLCGSCGGHYTNE---EFWICC 209
Query: 828 TVCKMWAHEECTQV 841
VC+ W H +C ++
Sbjct: 210 DVCERWYHGKCVKI 223
>At5g53430.1 68418.m06640 PHD finger family protein / SET
domain-containing protein (TX5) contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain; identical
to cDNA trithorax 5 (TX5) partial cds GI:16118406
Length = 1043
Score = 33.5 bits (73), Expect = 0.92
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 808 CVVCMSAYSESRPREKWIQCTVCKMWAHEECTQV 841
C +C ++ + W++C CK+W H C Q+
Sbjct: 416 CGICKRIWNHL-DSQSWVRCDGCKVWIHSACDQI 448
>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 255
Score = 33.5 bits (73), Expect = 0.92
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 753 EKEEIRREYENRLKRTKAKQVKKRLDGGKTKTNARSRGKIKMHQXXXXXXXXXCYCVVCM 812
+K + NR K + + + R K + + + + C C
Sbjct: 147 DKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACG 206
Query: 813 SAYSESRPREKWIQCTVCKMWAHEECTQV 841
+Y+ E WI C +C+MW H +C ++
Sbjct: 207 ESYAAD---EFWICCDLCEMWFHGKCVKI 232
>At1g14740.1 68414.m01762 expressed protein
Length = 733
Score = 33.5 bits (73), Expect = 0.92
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 806 CYCVVCMSAYSESRPREKWIQCTVCKMWAHEEC 838
C C VC+ S S W+ C VC W H C
Sbjct: 437 CMCPVCLRFDSASNTCS-WVGCDVCSHWCHAAC 468
>At5g48160.1 68418.m05949 tropomyosin-related contains weak
similarity to Tropomyosin, muscle (Allergen Ani s 3).
(Swiss-Prot:Q9NAS5) [Anisakis simplex]
Length = 574
Score = 33.1 bits (72), Expect = 1.2
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 806 CYCVVCMSAYSESRPREKWIQCTVCKMWAHEEC 838
C C +C + + S +WI C +C W H +C
Sbjct: 227 CMCTIC-NKFDFSVNTCRWIGCDLCSHWTHTDC 258
>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
Pfam domains PF00628: PHD-finger and PF00855: PWWP
domain; identical to cDNA trithorax 3 (ATX3) partial cds
GI:15217142
Length = 799
Score = 32.7 bits (71), Expect = 1.6
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 807 YCVVCMSAYSESRPREKWIQCTVCKMWAHEECTQV 841
YC +C + S + W+ C C +W H EC +
Sbjct: 350 YCGICKRIWHPSDDGD-WVCCDGCDVWVHAECDNI 383
>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
profile PF00628: PHD-finger
Length = 696
Score = 32.7 bits (71), Expect = 1.6
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 807 YCVVCMSAYSESRPREKWIQCTVCKMWAHEECTQVESLDTGYVQ 850
YC VC+ Y +S + C C+ W H +C + D Y+Q
Sbjct: 298 YCPVCLKVYRDSE-ATPMVCCDFCQRWVHCQCDGIS--DEKYMQ 338
>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
Pfam profile: PF00628: PHD-finger
Length = 704
Score = 32.3 bits (70), Expect = 2.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 822 EKWIQCTVCKMWAHEECTQVESLDT 846
E+ I C VC++W H C ++ DT
Sbjct: 619 ERMISCDVCEVWQHTRCCGIDDSDT 643
>At5g20510.1 68418.m02437 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 260
Score = 31.5 bits (68), Expect = 3.7
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 808 CVVCMSAYSESRPREKWIQCTVCKMWAHEECTQV 841
C C Y+ E WI C +C+ W H EC ++
Sbjct: 207 CGACGDNYASD---EFWICCDMCEKWFHGECVKI 237
>At2g16270.1 68415.m01863 expressed protein and genefinder;
expression supported by MPSS
Length = 759
Score = 31.5 bits (68), Expect = 3.7
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 593 PAFVTDRPNP-LEAADGPIQNINTLEDKTPPTSPSILTLEPQEEMEELSNEALLVQQPTE 651
P F+ +PNP +E + + L + + L++E EE E+ E ++V++ TE
Sbjct: 217 PQFLHYKPNPRIEKRFDECKQLEELFISESSSDDTELSVEESEEQEKDGAEEVVVEEETE 276
Query: 652 NMPQCSQVLDKE 663
++ Q D+E
Sbjct: 277 DVEQSEAESDEE 288
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 31.1 bits (67), Expect = 4.9
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 810 VCMSAYSESRPREKWIQCTVCKMWAHEEC 838
+C + + + W+QC +C W H +C
Sbjct: 398 ICGAVSESHKYKGVWVQCDLCDAWQHADC 426
>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc finger
(ZZ type) family protein contains Pfam profiles PF02135:
TAZ zinc finger, PF00569: Zinc finger, ZZ type
Length = 1706
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 822 EKWIQCTVCKMWAHEECTQVESLDTGYVQD-TNAKKLHLYCNILHTQKN 869
E W+QC C+ W H+ C +L G D A+ YC ++ ++N
Sbjct: 1036 ESWVQCDKCQAWQHQIC----ALFNGRRNDGGQAEYTCPYCYVIDVEQN 1080
>At5g26980.1 68418.m03219 syntaxin 41 (SYP41) / TLG2a identical to
SP|O65359 Syntaxin 41 (AtSYP41) (AtTLG2a) {Arabidopsis
thaliana}
Length = 322
Score = 30.7 bits (66), Expect = 6.5
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Query: 286 KKDVMKLAYELTVKYNLSRPRTWDDNGMAGEEWFRMFMKRNSELSVRAA----QATSLSR 341
K+D M L E+ + N RP D M E +K++ E+SV Q
Sbjct: 188 KEDGMDL--EMNLSRNRYRPEEDDFGDMLNEHQMSK-IKKSEEVSVEREKEIQQVVESVN 244
Query: 342 ATSFNRKNVDAFYDNLANVMDRYKFEPQNIYNVDETGITTVQKPDRIIARRGARQVGSV 400
+ K++ A + ++DR + +N+ E G+ +QK +R G + SV
Sbjct: 245 DLAQIMKDLSALVIDQGTIVDRIDYNIENVATTVEDGLKQLQKAERTQRHGGMVKCASV 303
>At5g01370.1 68418.m00050 expressed protein
Length = 427
Score = 30.7 bits (66), Expect = 6.5
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 726 PLPKAPPRKLTNRGRKTRKSTIYTDTPEKEEIRREYENRLKRTKAKQVKKRLDGGKTKTN 785
PLP + P+K N K K + D P K +++ ENR AK+V+ L K+K++
Sbjct: 206 PLPPSAPKKKENE--KVAKK--FKDEPRKVAKKKKSENRNDVNGAKKVRWFLSPSKSKSS 261
Query: 786 A 786
+
Sbjct: 262 S 262
>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
CREB-binding protein GB:S39162 from [Homo sapiens]
Length = 1670
Score = 30.7 bits (66), Expect = 6.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 816 SESRPREKWIQCTVCKMWAHEEC 838
++ E W+QC C+ W H+ C
Sbjct: 1002 NDEEVEESWVQCDKCQAWQHQIC 1024
>At1g67220.1 68414.m07651 zinc finger protein-related similar to
SP|Q09472 E1A-associated protein p300 {Homo sapiens},
SP|Q92793 CREB-binding protein {Homo sapiens}; contains
Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
PHD-finger, PF02135: TAZ zinc finger
Length = 1357
Score = 30.7 bits (66), Expect = 6.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 822 EKWIQCTVCKMWAHEEC 838
E+W+QC C+ W H+ C
Sbjct: 726 EEWVQCESCEKWQHQIC 742
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 808 CVVCMSAYSESRPREKWIQCTVCKMWAHEECTQVE 842
C +C Y+ P +I CT C MW H E ++E
Sbjct: 1245 CWICKLPYN---PGLTYIHCTSCDMWYHIEAVKLE 1276
>At5g05610.2 68418.m00611 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 241
Score = 30.3 bits (65), Expect = 8.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 810 VCMSAYSESRPREKWIQCTVCKMWAHEECTQV 841
+C S E WI C VC+ W H +C ++
Sbjct: 187 LCGSCGGNYTNDEFWICCDVCERWYHGKCVKI 218
>At5g05610.1 68418.m00610 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 241
Score = 30.3 bits (65), Expect = 8.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 810 VCMSAYSESRPREKWIQCTVCKMWAHEECTQV 841
+C S E WI C VC+ W H +C ++
Sbjct: 187 LCGSCGGNYTNDEFWICCDVCERWYHGKCVKI 218
>At1g65070.1 68414.m07377 DNA mismatch repair MutS family protein
contains Pfam profile PF00488: MutS domain V
Length = 857
Score = 30.3 bits (65), Expect = 8.5
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 724 IRPLPKAPPRKLTNRGRKTRKS--TIYTDTPEKEEIRREYENRLKRTKAKQVKKRLDGGK 781
I+PLP++ + +NR ++++ + + +K E R+ KRT A K G K
Sbjct: 758 IKPLPRSTSSQTSNRSLRSKRQFFVVPDNCTDKHERARQCVANAKRTSADSNVKEHIGSK 817
Query: 782 TKTNARS 788
RS
Sbjct: 818 RNAGGRS 824
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.133 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,435,034
Number of Sequences: 28952
Number of extensions: 1258883
Number of successful extensions: 3167
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3139
Number of HSP's gapped (non-prelim): 40
length of query: 1260
length of database: 12,070,560
effective HSP length: 90
effective length of query: 1170
effective length of database: 9,464,880
effective search space: 11073909600
effective search space used: 11073909600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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