Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000980-TA|BGIBMGA000980-PA|IPR007303|TIP41-like protein
(131 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42018| Best HMM Match : TIP41 (HMM E-Value=1e-38) 104 2e-23
SB_34391| Best HMM Match : PPR (HMM E-Value=7.8e-08) 29 0.93
SB_4364| Best HMM Match : E1_dh (HMM E-Value=3.1e-13) 29 1.6
SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_33418| Best HMM Match : IQ (HMM E-Value=1.6) 28 2.8
SB_8817| Best HMM Match : I-set (HMM E-Value=0) 28 2.8
SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 27 5.0
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6) 26 8.7
SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
>SB_42018| Best HMM Match : TIP41 (HMM E-Value=1e-38)
Length = 171
Score = 104 bits (250), Expect = 2e-23
Identities = 56/128 (43%), Positives = 81/128 (63%), Gaps = 7/128 (5%)
Query: 1 MVFPKNRLTLAHKSGASINFNPLDALKRVASTVEPVEVSCSEVWMQARPYAEKLK---KS 57
M F N L + H SG I FN +DA+K V + + ++V+ ++ W + R +E +K K
Sbjct: 1 MTFGDNCLKIQHASGFGIQFNAIDAIKLVDNKHDLMKVAVADQWQRERQGSEFIKEVIKP 60
Query: 58 FDWTFCTDYKGSI---SDN-ITVWETEESIDFELLKQKNQILFYHDLTLFEDELHDHGVS 113
FDWT+ TDYKG++ +DN + + T + ID E LK K +I FY DL LFEDEL D+G +
Sbjct: 61 FDWTYTTDYKGTLIGEADNSLRIQPTTDRIDIEKLKVKEKIYFYEDLVLFEDELADNGTA 120
Query: 114 KLSVKIVS 121
KL+VK+ S
Sbjct: 121 KLNVKMCS 128
>SB_34391| Best HMM Match : PPR (HMM E-Value=7.8e-08)
Length = 202
Score = 29.5 bits (63), Expect = 0.93
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 16 ASINFNPLDALKRVASTVEPVEVSCSEVWMQARPYAE 52
A ++ +PL LK +ASTVEP E C M R AE
Sbjct: 23 AVLSRDPLAVLKALASTVEPEE--CKAAMMSGRKAAE 57
>SB_4364| Best HMM Match : E1_dh (HMM E-Value=3.1e-13)
Length = 238
Score = 28.7 bits (61), Expect = 1.6
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 38 VSCSEVWMQARPYAEKLKKSFDWTFCTDYKG--SISDNITVWETEESIDFELLKQKN 92
V+C QAR Y + KK + F T G S SDN ++ +E+ F K+KN
Sbjct: 95 VACLHATQQARKYIVEQKKPYFLEFMTYRLGDHSTSDNSALYRSEDERKF--WKEKN 149
>SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 78 ETEESIDFELLK----QKNQILFYHDLTLFEDELHDHGVS 113
ETE I E++K + + FYHD+ F++E H + +S
Sbjct: 185 ETEIKIREEIIKLSIEEGGKFYFYHDVDNFDNEPHSYNIS 224
>SB_33418| Best HMM Match : IQ (HMM E-Value=1.6)
Length = 344
Score = 27.9 bits (59), Expect = 2.8
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 63 CTDYKGSISDNITVWETEESI-DFELLKQKNQILFYHDLTLFEDELHD 109
C +G D T ++++ DF L Q QI F D L ++E HD
Sbjct: 159 CLTSEGENPDKETTEDSDKRFTDFSLKAQDLQICFVDDTLLTDEEEHD 206
>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
Length = 2526
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 80 EESIDFELLKQKNQILFYHDLTLFEDELHDHGVSKLSVKIVSTP 123
+ES +LLK + + F D T+ E ++ D G +L+VK+ P
Sbjct: 273 KESEKRKLLKGEERPKFVSDSTVEEFKITDEGELRLTVKVTGKP 316
>SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 306
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 24 DALKRVASTVEPVEVSCSEVWMQARPYAEKLKKSFDWTFCTDY 66
+ALK ST + VE E+ + + Y+E+ + FD F +Y
Sbjct: 176 EALKESESTAKKVERELREMKFRMQNYSEEEEDEFDSDFDPEY 218
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 26.6 bits (56), Expect = 6.6
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 31 STVEPVEVSCSEVWMQARPYAEKLKKSFDWTFCTDYKGSISDNITVWETEES 82
S +E +SC ++ Q +E+ K+ D+T ++K S+++T E+ E+
Sbjct: 3829 SQLEEEIISCKKLIEQVDEISERDIKTMDYTLLNEFK---SESVTALESSEN 3877
>SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6)
Length = 379
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 71 SDNITVWETEESIDFELLKQKNQILFYHDLTLFEDELHDH---GVSKLSVKIVSTPLIF 126
SD +WE D ++ ++ + F H L E + H +S +S+ ++ L+F
Sbjct: 289 SDARELWECMHPSDSDIFNEEESVFFMHSL---ESHFYHHFKISLSSMSLSRIANSLVF 344
>SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1322
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 53 KLKKSFDWTFCTDYKGSISDNITVWETEESIDFELLKQKNQIL 95
K+K D TF + + DN VW+ E I+ +LL L
Sbjct: 12 KVKSLMDSTFPKRRQNVLVDNERVWKVLEDIEDQLLNNLTMFL 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.133 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,311,628
Number of Sequences: 59808
Number of extensions: 157415
Number of successful extensions: 344
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 12
length of query: 131
length of database: 16,821,457
effective HSP length: 75
effective length of query: 56
effective length of database: 12,335,857
effective search space: 690807992
effective search space used: 690807992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
- SilkBase 1999-2023 -