GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000980-TA|BGIBMGA000980-PA|IPR007303|TIP41-like protein
         (131 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    67   7e-13
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   0.95 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   1.3  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   2.9  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    25   5.1  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    25   5.1  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   5.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   5.1  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.7  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    24   6.7  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    24   6.7  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    24   6.7  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    24   6.7  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    24   8.9  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    24   8.9  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    24   8.9  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    24   8.9  
SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   8.9  

>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 67.3 bits (157), Expect = 7e-13
 Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 5/123 (4%)

Query: 1   MVFPKNRLTLAHKSGASINFNPLDALKRVASTVEPV-EVSCSEVWMQAR--PYAE-KLKK 56
           M F  N +++ +K+   + F   DALK V +  E V +VS ++ W ++R  P  E  +  
Sbjct: 41  MTFGNNYISIEYKNQPVVGFFTEDALKMVGTKPEDVMQVSFAKDWAKSRIKPGEEYPVIY 100

Query: 57  SFDWTFCTDYKGSIS-DNITVWETEESIDFELLKQKNQILFYHDLTLFEDELHDHGVSKL 115
            FDWT+ TDY+G+I   N    E ++ I  + +    Q L+++++ LFEDEL D+G S  
Sbjct: 101 PFDWTYYTDYQGTIQRPNAKFIEIDQVIPVQKILNAGQNLWFNEIILFEDELADNGKSMF 160

Query: 116 SVK 118
            V+
Sbjct: 161 DVR 163


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 27.1 bits (57), Expect = 0.95
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 52  EKLKKSFDWTFCTDYKGSISDNITVWETEESIDFELLKQKNQILFYH 98
           E LKK F        KG +   +TV    E +DF L  +K  I FYH
Sbjct: 117 EMLKKEFARVEAAKEKGHMQF-LTVENEREVMDFTLSSKKVVIHFYH 162


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 58  FDWTFCTDYKGSISDNITVWETEESIDFELLKQKNQILFYHDLT---LFEDELHDHGVSK 114
           FD  F    +G +S  + V     ++ F+ L     ++ Y  L    LF D   DH V  
Sbjct: 601 FDLKFWKRLRGLLS-KLYVVPFNRNLLFKRLMGIRFVIHYRSLATAFLFADREPDHSVMF 659

Query: 115 LSVKIVSTP 123
           LSV+  +TP
Sbjct: 660 LSVQFFTTP 668


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)

Query: 48  RPYAEKLKKSFDWTFCT 64
           RPY E  K   DWTF T
Sbjct: 531 RPYDENSKGFLDWTFMT 547


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 103 FEDELHDHGVSKLSVKIV 120
           F DELH H VS  S+K++
Sbjct: 397 FYDELHHHRVSGYSLKMI 414


>SPBC30B4.08 |eri1||double-strand siRNA
          ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 22 PLDAL-KRVASTVEPVEVSCSEVWMQARPYAEKLKKSFDWTF 62
          P D + ++  STVE + ++  E+ +      EKLK+   W F
Sbjct: 13 PCDEMNQKTPSTVEEIRIALQELGLSTNGNKEKLKRR--WKF 52


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 11/46 (23%), Positives = 19/46 (41%)

Query: 28  RVASTVEPVEVSCSEVWMQARPYAEKLKKSFDWTFCTDYKGSISDN 73
           ++ S V  +EV   ++      Y +     F W +   Y+   SDN
Sbjct: 202 KLESAVSDIEVESQQINKPVTKYVDNTPVEFGWLYEISYQLEGSDN 247


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 63   CTDYKGSISDNITVWETEESIDFELLKQKNQ-ILFYHDLTLFEDELH 108
            C  Y+  ++  ++ +   ES   EL K++ + ++F  ++T + D+LH
Sbjct: 1041 CRTYESQLASLVSKYSETES---ELNKKEAELVIFQKEITEYRDQLH 1084


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 19  NFNPLDALKRVASTVEPVEVSCSEV----WMQARPYAEKLKKSF-DWTFCTDYKGSISDN 73
           + + L+ L    ST++ V  SC EV    W+  +  A K K  + D    T++   I + 
Sbjct: 268 SISTLEVLLNTVSTIQSVSESCPEVNFYEWLNDKNLAYKNKLIYQDPDLATEFNLIIKEA 327

Query: 74  ITV-WETEESI 83
           +++ W  + +I
Sbjct: 328 LSLPWPKKYNI 338


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 67  KGSISDNITVWETEESIDFELLKQKNQ 93
           KG + DNI+V   ++ +D E+  Q+++
Sbjct: 176 KGQLRDNISVPNQQDGLDPEVFNQQSK 202


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 72  DNITVWETEES----IDFELLKQKNQILFYHDLTLFEDEL 107
           +N+  W   +S    + F+  K +NQ LF H +  F+D +
Sbjct: 27  ENVEFWLIPKSEYLNVAFKSDKSRNQALFSHAIKEFQDSI 66


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 65  DYKGSISDNITVWETEESIDFELLKQKN-QILFYHDLTLFEDELHDHGVSKLSVKIVSTP 123
           DY  S S N  V+ T   ++  L +      LFY+  +   ++    G+  LS KI+ TP
Sbjct: 122 DYTNSNSSNKLVFGTP--LEDALRRDATINALFYNLKSKTVEDFTGKGLVDLSNKIIRTP 179

Query: 124 LI 125
           L+
Sbjct: 180 LV 181


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 1   MVFPKNRLTLAHKSGASINFNPLDALKRVASTVEPVEVSC 40
           ++FP N L+  +K   +++ NP   L+RV   V+ V   C
Sbjct: 278 LLFPSNELSHINKPILNMDDNPYSILERV-EQVDVVPTIC 316


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 48  RPYAEKLKKSFDWTFCTDYKGSISDNITVW 77
           R YAE+    F++    +YK SI D    W
Sbjct: 132 RDYAERHGFKFEFLDLDEYKPSIGDKPAPW 161


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 104  EDELHDHGVSKLSVKIVSTPLIFRKYL 130
            +D + D GV   + + V   L+FRKYL
Sbjct: 1080 DDSIRDEGVLDKNNQPVRGGLLFRKYL 1106


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 87  LLKQKNQILFYHDLTL 102
           +L QK ++LFYH L L
Sbjct: 167 VLAQKYKVLFYHSLNL 182


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 96  FYHDLTLFEDELHDHGVSKLSVKIVSTPL 124
           F H   L ED  H+  VS    +++STP+
Sbjct: 89  FLHKKLLNEDTGHESKVSDQVKQVISTPM 117


>SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 218

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 1  MVFPKNRLTLAHKSGASIN-----FNPLDALKRVASTVEPVEVSCSEVWMQARPYAEKLK 55
          M+FP NRL    +S   IN     FN  D   R     E V    ++   +A+  + K+K
Sbjct: 15 MIFPPNRLQSTIRSKEEINSSRHKFNIADTSVRKQYNEELVFTKDAKENAEAKKVSSKVK 74

Query: 56 K 56
          K
Sbjct: 75 K 75


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,009
Number of Sequences: 5004
Number of extensions: 24110
Number of successful extensions: 70
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 18
length of query: 131
length of database: 2,362,478
effective HSP length: 66
effective length of query: 65
effective length of database: 2,032,214
effective search space: 132093910
effective search space used: 132093910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)