GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000980-TA|BGIBMGA000980-PA|IPR007303|TIP41-like protein
         (131 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0041 - 31242524-31242628,31243219-31243260,31243363-312434...    72   2e-13
04_04_0393 - 24894170-24894676,24895956-24896627,24897720-248979...    31   0.23 
01_06_0892 + 32763195-32764149,32764489-32764575,32764665-327648...    29   1.6  
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510...    27   4.9  
12_01_0864 - 8205371-8205913,8206304-8206452,8206677-8206737,820...    26   8.6  
07_01_0684 - 5161218-5161427,5161509-5161616,5162217-5162390,516...    26   8.6  

>03_06_0041 -
           31242524-31242628,31243219-31243260,31243363-31243422,
           31243567-31243674,31243792-31243882,31244223-31244408,
           31245088-31245236
          Length = 246

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 17/140 (12%)

Query: 1   MVFPKNRLTLAH-KSGASINFNPLDALKRVA-STVEPVEVSCSEVWMQARPYAEKLKKSF 58
           MVF ++ L+L H ++G  + FN LDALK      + PVEV  +  W      ++++   +
Sbjct: 63  MVFGESFLSLQHAQTGIRLYFNALDALKAWKHEALPPVEVPAAAKWKFRSKPSDQVILDY 122

Query: 59  DWTFCTDYKGSIS-----DNITV---------WE-TEESIDFELLKQKNQILFYHDLTLF 103
           D+TF T Y GS +     D+I           WE +E+ ID   L  K  ILFY ++ L+
Sbjct: 123 DYTFTTPYNGSDALVQNPDSIQTSLDEPRNLCWEDSEDRIDLVALSAKEPILFYDEVILY 182

Query: 104 EDELHDHGVSKLSVKIVSTP 123
           EDEL D+G+S L+V++   P
Sbjct: 183 EDELADNGISFLTVRVRVMP 202


>04_04_0393 -
           24894170-24894676,24895956-24896627,24897720-24897956,
           24898852-24899388,24899612-24899662,24900756-24900767
          Length = 671

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 20  FNPLDALKRVASTVEPVEVSCSEVWMQA 47
           FN +DA KR+   V PV VSCS++ + A
Sbjct: 226 FNVIDAAKRLLEAVCPVTVSCSDILVLA 253


>01_06_0892 +
           32763195-32764149,32764489-32764575,32764665-32764829,
           32764904-32766219
          Length = 840

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 28  RVASTVEPVEVSCSEVWMQARPYAEKLKKSFDWTFCTDYKGSISDNITVWE-TEESIDFE 86
           R+ + +EP E  CS           ++ KS D   C     SI +  +V + T  S D  
Sbjct: 156 RMITELEPAEAVCSPKICTDYSILHQVDKSLDKDICHQSDHSIHERYSVLQMTSGSEDEA 215

Query: 87  LLKQKNQILFYHDLTLFEDELHDHGVSK 114
                 +I  +H     E++L++   ++
Sbjct: 216 PCADDGKISHHHKTNCMEEDLNEDATAE 243


>12_01_0618 -
           5099021-5099668,5099701-5100221,5100311-5100352,
           5100905-5100962
          Length = 422

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 54  LKKSFDWTFCTDYKGSISDNITVWETE-ESIDFELLKQKNQ 93
           L  SFDW+   +     ++ I  W +E E +   L ++KN+
Sbjct: 69  LSSSFDWSKLAEMAQQAAEGIHTWSSEVERLKTNLTEEKNK 109


>12_01_0864 -
          8205371-8205913,8206304-8206452,8206677-8206737,
          8206815-8206917,8207197-8207492
          Length = 383

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 47 ARPYAEKLKKSFDWTFCTDYKGSISDNITVWETEESIDFEL 87
          A+  AE LK   DW FC+ Y+G   D    +  E+S+D EL
Sbjct: 50 AKLSAELLK---DW-FCSFYEGFKKDARVWFPYEDSVDLEL 86


>07_01_0684 -
           5161218-5161427,5161509-5161616,5162217-5162390,
           5162515-5162643,5162722-5163009,5163114-5163346,
           5164235-5165060
          Length = 655

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 2   VFPKNRLTLAHKSGASINFNPLDALKRVASTVEPVEVSCSEVWMQARPYAEKLK 55
           V P      A  +GA   F+ L  L R  +T  P + + +E +  ARP+ + L+
Sbjct: 78  VSPAPASAAAAAAGALPIFSSLLLLPRPNATATPFDGTAAEAFAAARPHLDHLR 131


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,596,324
Number of Sequences: 37544
Number of extensions: 124699
Number of successful extensions: 289
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 7
length of query: 131
length of database: 14,793,348
effective HSP length: 74
effective length of query: 57
effective length of database: 12,015,092
effective search space: 684860244
effective search space used: 684860244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)