GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000980-TA|BGIBMGA000980-PA|IPR007303|TIP41-like protein
         (131 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   1.5  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   4.5  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   4.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   7.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    20   7.8  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 48  RPYAEKLKKSFDWTFCTDYKGSISDNITVWETEESI 83
           RP  + +   F  T+ T YK   S NIT   T   +
Sbjct: 271 RPIDDNIDDEFKGTYKTLYKQMWSQNITERPTTNEV 306


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
          protein.
          Length = 105

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 45 MQARPYAEKLKKSFDWTFCTDYKGSISDNITVWETEESIDFE 86
          +Q RP  E  K   +WTF +    S  DN      + ++ FE
Sbjct: 31 LQPRPSFELSKNGDEWTFTS----SSGDNTYTKTFKMNVPFE 68


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
          protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 45 MQARPYAEKLKKSFDWTFCTDYKGSISDNITVWETEESIDFE 86
          +Q RP  E  K   +WTF +    S  DN      + ++ FE
Sbjct: 33 LQPRPSFELSKNGDEWTFTS----SSGDNTYTKTFKMNVPFE 70


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 64  TDYKGSISDNITVWETEESIDFELLKQKNQIL 95
           T  KG++   I   E E  + F   +QKN ++
Sbjct: 495 TSMKGTVRIFIGPKEDERGLPFTFREQKNLMI 526


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
          receptor protein.
          Length = 399

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 54 LKKSFDWTFCTDYKGSISDNITVWE 78
          + + +D T C   +     N+ VWE
Sbjct: 11 MTEDYDMTGCGPPEEETGSNLPVWE 35


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,450
Number of Sequences: 429
Number of extensions: 1259
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 131
length of database: 140,377
effective HSP length: 51
effective length of query: 80
effective length of database: 118,498
effective search space:  9479840
effective search space used:  9479840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)