Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000979-TA|BGIBMGA000979-PA|IPR007259|Spc97/Spc98
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 134 3e-32
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 80 1e-15
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 33 0.10
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 29 2.2
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 29 2.2
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 29 2.9
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 29 2.9
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 28 3.8
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 27 6.6
SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein Nnf1|Schizosacch... 27 8.7
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 134 bits (325), Expect = 3e-32
Identities = 82/263 (31%), Positives = 122/263 (46%), Gaps = 12/263 (4%)
Query: 317 TKIGKSELRGGAVLTVLHDKTNTLMGDARAQEISLFLTERACRPYLNVLDQWIHKGTIVD 376
T+ K +GG V++ L + GD A++I +L A RPY +L++WIH G + D
Sbjct: 246 TRSKKKVCKGGQVISFLTESLTKYAGDPVARKILTYLLREASRPYTKMLNEWIHLGLVND 305
Query: 377 PFQEFMIEDNELINKEELPVDYSADYWEKRYCIQSDRVPKFLDKFTDIILRTGKYLNVIS 436
P+ EFMI+ ++ I +L DY+ +YWEKRY I+ D+VP L + +L GKYLNV+
Sbjct: 306 PYDEFMIKIHKGITSMQLDEDYTDEYWEKRYVIREDQVPPQLLDLQNKVLFAGKYLNVVL 365
Query: 437 QCGKSISKTNTDEIKYSLREQ----------NYGAIIQKAYAFAXXXXXXXXXXXYDLMG 486
+C K ++ + K + Q N+ I AY +A L
Sbjct: 366 ECRKGVNNLASLNAKDDTQNQLLWPSTFDDDNFTLNIMNAYVYANESLLQLLQSSQSLYA 425
Query: 487 RLKSVKNYFLMSQGDFIVQFMDATDQELSK--KIDDIIPXXXXXXXXXXXXXXXXXHDPY 544
L S+K+YF + Q DF F+D EL K K I DP+
Sbjct: 426 HLYSLKHYFFLDQSDFFTTFLDNAQHELRKPAKYISITKLQSQLDLALRQPGTITATDPH 485
Query: 545 NEDMRVELLPYDLQFQMFKILSI 567
E + VE+ L + I+SI
Sbjct: 486 KEYVTVEVNQTSLIDWLMHIVSI 508
Score = 64.5 bits (150), Expect = 5e-11
Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 8/148 (5%)
Query: 177 SSLAGIPIASQENILIDELLYIFYGVPGNYIVHQPVKDTYDART------FLISEDVDDA 230
S + + I QE LI+ELL F G+ G ++ Q +K + + T F I D
Sbjct: 57 SDPSNLNIHQQEACLINELLNAFMGMEGVFVHLQDMKASSEFETIIMPPSFYILPGFDLG 116
Query: 231 LKQIVQQMLPLASNYSIVRRFIEHCNMWS-GQVLHALVAAIEILLKDYYTMIAQLETE-H 288
+K I +ML + S+Y + FIE + + G V HAL AA+ + DY +I Q E +
Sbjct: 117 IKDIASEMLEMGSHYLSITAFIESRSHFEYGFVNHALCAALRKFVMDYVVLIMQCENQSR 176
Query: 289 MTGSLSLQKLWYFVLPTMHTMQVLAAIV 316
+ + SLQ L + LPT +++ + I+
Sbjct: 177 IDPNFSLQTLRLYTLPTSRSLRQVYLIL 204
Score = 64.1 bits (149), Expect = 6e-11
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 584 LTGIETFSFGMEVKWPVSLVLNHKAIACYQMIFRHLFYCKHVERLLCKVWLYNKVVKRF- 642
+ G ET +V +P+SL+L+ KAI YQ++FR+ +HVE L W+ + +
Sbjct: 560 INGFETMQLCYKVPFPLSLILSRKAIIRYQLLFRYFLLLRHVEMQLENSWVQHSKNSAWR 619
Query: 643 ---SEARL---YADAFALRQRMLSCIQHLQYYMCVEVIEPSWCQLIQSLD 686
S A++ +++ LR RMLS +Q + YY EVIE W + + L+
Sbjct: 620 LNSSNAKIEQWKRNSWLLRTRMLSFVQKIIYYTTSEVIETHWGKFMGELE 669
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 79.8 bits (188), Expect = 1e-15
Identities = 100/439 (22%), Positives = 180/439 (41%), Gaps = 48/439 (10%)
Query: 263 LHALVAAIEILLKDYYTMIAQLETEHMTGSLSLQKLWYFVLPTMHTMQV-------LAAI 315
L +L + I L ++ +IA L+++ + SL+K + + QV L+++
Sbjct: 274 LQSLKSVISKELTNFLALIASLDSQ-IRADASLEKPMVTIRRCIAWTQVAKLKLRILSSV 332
Query: 316 VTKIGKSELRGGAVLTVLHDKTNTLMGDARAQEISLFLTERACRPYLNVLDQWIHKGTIV 375
V E + + V K N + GD QE+S + P +++ WI+KG +V
Sbjct: 333 VNDNMNQENKKRLIQVV--SKYN-VHGDPLIQELSDKILTEITGPLYEMIENWIYKGELV 389
Query: 376 DPFQEFMIEDNELINKEELPVDYSAD-YWEKRYCIQSDRVPKFL-DKFTDIILRTGKYLN 433
DP+QEF +++ E D W+ +Y + + +P FL ++ D I GK LN
Sbjct: 390 DPYQEFFVKEKN--GSESHDHQGQGDVVWKGKYFLDKELIPSFLSEELVDKIFLIGKSLN 447
Query: 434 VISQ-CGK-SISKTNTDEI--KYSLRE-QNYGAIIQKAYAFAXXXXXXXXXXXYDLMGRL 488
CG ++ + ++ K S R+ + ++ KAY + + L L
Sbjct: 448 FARYGCGDFDWAQEHYQKLVKKLSYRDPHSLETVVDKAYTESINHLVYLMEEVFHLTDHL 507
Query: 489 KSVKNYFLMSQGDFIVQFMDATDQELSKKIDDIIPXXXXXXXXXXXXXXXXXHDPYNEDM 548
K++K Y L+ QGDF+ M++ L + + + ++P
Sbjct: 508 KAIKKYLLLGQGDFVDLLMESLGNSLDQPANTLFRHNLTASLESAIRSSNASYEP----- 562
Query: 549 RVELLPYDLQFQMFKILSIXXXXXXXYKHNKDCPPLTGIETFSFGMEVKWPVSLVLNHKA 608
Y L+ ++L + H + TG + F+ +V P+++++
Sbjct: 563 -----EYVLKRLDARLLEL--------SHGE-----TGWDVFTLEYKVDSPINVIITPYC 604
Query: 609 IACYQMIFRHLFYCKHVERLLCKVWLYNKVVKRFSEARLYADAFALRQRMLSCIQHLQYY 668
Y IF L+ K +E L W + +R L D +SC HL
Sbjct: 605 SRQYLKIFNFLWRLKRIEFALAHSWRRVNLGERNVFRNL--DYTKFEWHFVSC--HLA-E 659
Query: 669 MCVEVIEPSWCQLIQSLDK 687
M VIE SW +L +++K
Sbjct: 660 MIHFVIEISWQELQLAMEK 678
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 33.5 bits (73), Expect = 0.10
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 596 VKWPVSLVLNHKAIACYQMIFRHLFYCKHVERLLCKVWLYNKVVKRFSEARLYADAFALR 655
+KWP +L ++ A+ Y ++ L H+ K Y + K ++ A+ + +
Sbjct: 396 LKWPFNLFMDKNALNVYSDLWI-LLGSLHLSITKIKSLFYER--KEYT-AKGISQPWTQL 451
Query: 656 QRMLSCIQHLQYYMCVEVIEPSWCQLIQSLDKL 688
L + LQYY VI+PS+C+L +SL +L
Sbjct: 452 WVTLWFLSSLQYYAYECVIKPSYCKLRESLTEL 484
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 126 VDESKKLVMKSFEEKESRLQPTWYSSLDLPNWQKDHPAMSWDFPKDPVPIISSLAGIPIA 185
+D+S L +S P W SS +LP + D AM V + +P+
Sbjct: 438 LDQSSPLFTGVLSSSDS--VPQWTSSYNLPGYPPDATAMGSTSSACKVIVYQFFFRVPVT 495
Query: 186 SQENILIDELLYIFYGVPGNYIVHQPVKDTYDARTF 221
++ + + +FYG G+ + YD +
Sbjct: 496 DTFSLDVTNVDDVFYGWFGDKAISGWSNTNYDTYAY 531
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 10 DALGCNLEADSVFDCIQNDPNYGNCNLSSKQVNEYAQRLALKASNAKAFLKKYEELKNRN 69
D C + D + D I + +G ++ K +N+Y + ++ + L+KY+E N
Sbjct: 465 DLKTCLQDVDELVDIIGEEKGHGE-SIRDKSMNDYYVKNMVRKAQVLEQLEKYQESLNIW 523
Query: 70 TDNLSD 75
D ++D
Sbjct: 524 KDLIAD 529
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 263 LHALVAAIEILLKDYYTMIAQLETEHMTGSLSLQK 297
+ ALVAA+++ LK + + + Q E E G + +++
Sbjct: 795 MEALVAAVDLQLKGFISRVQQREEEAKNGDIDIEE 829
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 112 KEDLPQIKDKLLKAVDESKKLVMKSFEEKESRLQPTWYSS 151
KE++ ++KD+ + +ESK + S +ESR + T+Y S
Sbjct: 139 KEEISKLKDRTEASKEESKTVTDHS-NRRESRRESTYYDS 177
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 28.3 bits (60), Expect = 3.8
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 118 IKDKLLKAVDESKKLVMKSFEEKESRLQPTWYSSLDLPNWQKDHPAMSWDFPKDPVPIIS 177
+KD L+ A++ SK+ K +KE + S + +P+ D + PKDP P+
Sbjct: 465 LKD-LVNALNTSKEQ-HKGAIDKEKLTEALNISCVYVPD-ATDAAKPQYYIPKDPYPVPH 521
Query: 178 SLAGIPI----ASQENILIDE--LLYIFYGVPGNY 206
P+ +S+ L+D L Y+FY PG Y
Sbjct: 522 YYPQQPLPLFDSSEMTELVDPDTLFYMFYYRPGTY 556
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.5 bits (58), Expect = 6.6
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 216 YDARTFLISEDVDDALKQIVQQML--PLASNYSIVRRFIEHCNMWSGQVLHA-LVAAIEI 272
YDA L + D V +L L+ + + +++ N W G + + V +I+
Sbjct: 702 YDANVVLQEINSQDEFLSTVSIILYRRLSRHQDALDVYLKILNDWEGALSYCNSVYSIDG 761
Query: 273 LLKDYYTMIAQLETEHMTGSLSL 295
+ YY ++A++ + +GSL++
Sbjct: 762 ETEPYYMLLAEISKNYKSGSLNI 784
>SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein
Nnf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 324 LRGGAVLTVLHDKTNTLMGDARAQEISLFLTERACRPYLNVLDQWIH 370
++ G V+ V+H + + QE + + ER L++LD+ IH
Sbjct: 35 MKKGKVIAVIHQQLIEFFEKSCKQEYANLIKERDLNKKLDMLDECIH 81
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.137 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,454
Number of Sequences: 5004
Number of extensions: 124774
Number of successful extensions: 364
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 12
length of query: 694
length of database: 2,362,478
effective HSP length: 78
effective length of query: 616
effective length of database: 1,972,166
effective search space: 1214854256
effective search space used: 1214854256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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