Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000979-TA|BGIBMGA000979-PA|IPR007259|Spc97/Spc98
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36861| Best HMM Match : No HMM Matches (HMM E-Value=.) 150 4e-36
SB_37303| Best HMM Match : Spc97_Spc98 (HMM E-Value=0) 93 7e-19
SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05) 33 1.0
SB_5292| Best HMM Match : GlnE (HMM E-Value=1.7) 32 1.8
SB_16342| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4
SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43) 30 7.2
SB_35680| Best HMM Match : Sushi (HMM E-Value=4.4e-22) 30 7.2
SB_8425| Best HMM Match : EGF (HMM E-Value=0) 30 7.2
>SB_36861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 150 bits (363), Expect = 4e-36
Identities = 79/213 (37%), Positives = 120/213 (56%), Gaps = 19/213 (8%)
Query: 355 ERACRPYLNVLDQWIHKGTIVDPFQEFMIEDNELINKEELPVDYSADYWEKRYCIQSDRV 414
++AC PYL++L+QWI+KG I DP+ EF++ ++ + KE++ DY+ Y
Sbjct: 299 DKACAPYLDLLEQWIYKGIINDPYSEFLVAEHGSVQKEKVTEDYNDAY------------ 346
Query: 415 PKFLDKFTDIILRTGKYLNVISQCGKSISKTNTDEIKYSLREQNYGAIIQKAYAFAXXXX 474
DI + K+L + C +++ + +EI Y+LRE+ Y I+KAY +A
Sbjct: 347 -----PLQDIKTLSNKHLPCLP-C-RNVQCPDAEEIIYTLREREYVEKIEKAYNYASKTL 399
Query: 475 XXXXXXXYDLMGRLKSVKNYFLMSQGDFIVQFMDATDQELSKKIDDIIPXXXXXXXXXXX 534
+LM RL+S+K+YFLM GDF VQFMD + E+ K +DDI+P
Sbjct: 400 LDMLMDERELMARLRSIKHYFLMDLGDFFVQFMDLAEDEMKKNMDDIMPSRLETLLELAL 459
Query: 535 XXXXXXHDPYNEDMRVELLPYDLQFQMFKILSI 567
DP+ +D+RVELLPYDL Q+F+ILS+
Sbjct: 460 RTSTANSDPFKDDLRVELLPYDLITQLFRILSV 492
Score = 99.1 bits (236), Expect = 1e-20
Identities = 51/142 (35%), Positives = 87/142 (61%), Gaps = 16/142 (11%)
Query: 182 IPIASQENILIDELLYIFYGVPGNYIVHQPVKDTYDARTFLISEDVDDALKQIVQQMLPL 241
+P+ QE ++++LL++ GV G YI +P+KD + R F++ + +D ++ ++V ++LP+
Sbjct: 175 LPVVMQELAIVEDLLFLMMGVEGKYIRVKPLKDKHGPRIFIVDKTLDVSMNEMVHRILPV 234
Query: 242 ASNYSIVRRFIEHCNMWS-GQVLHALVAAIEILLKDYYTMIAQLETEHMTGSLSLQKLWY 300
S+YS + RFIE + + G V HAL AA+ LLK G LSLQKLW+
Sbjct: 235 CSHYSTICRFIEEKSSFEYGLVNHALCAAMRTLLK---------------GQLSLQKLWF 279
Query: 301 FVLPTMHTMQVLAAIVTKIGKS 322
++ P + TM++L+AI + K+
Sbjct: 280 YIQPCIRTMEILSAIAVAVDKA 301
Score = 50.0 bits (114), Expect = 6e-06
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 647 LYADAFALRQRMLSCIQHLQYYMCVEVIEPSWCQLIQSLDKLIEI 691
LYA AFALRQRML +Q ++YM EV+EP+W + ++L ++ I
Sbjct: 537 LYASAFALRQRMLHFVQTFEHYMMFEVLEPNWHLMDKALQEVTNI 581
>SB_37303| Best HMM Match : Spc97_Spc98 (HMM E-Value=0)
Length = 661
Score = 93.1 bits (221), Expect = 7e-19
Identities = 90/353 (25%), Positives = 158/353 (44%), Gaps = 40/353 (11%)
Query: 188 ENILIDELLYIFYGVPGNYIVHQPVKDTYDARTFLISEDVDDALKQIVQQMLPLASNYSI 247
E +L+ E++YIF G+ G I P D Y + V +++ +V ++ L Y
Sbjct: 184 EAVLLREIIYIFQGIEGTIIKLDPTTDAYRISN---NVGVPKSVRDLVNKLGELGWLYRK 240
Query: 248 VRRFIE--HCNMWSGQVLHALVAAIEILLKDYYTMIAQLETEHM-----------TGSLS 294
VR++++ + G V + AA++ L +YY ++A LE + +GSL+
Sbjct: 241 VRKYLDARSGDRALGLVGQSFCAALQQELSEYYRLMAVLEGQQQLSDQGVVGEGASGSLT 300
Query: 295 LQKLWYFVLPTMHTMQVLAAIV-TKIGKSELRGGAVLTVLHDKTNTLMGDARAQEISLFL 353
L++L + + ++ LAA+V T GK +GGA+L+ +H T GD + + +
Sbjct: 301 LRRLVIWTYDPLLRLRTLAALVDTCKGK---KGGALLSAIH--TYMQHGDPFVRSLVKHM 355
Query: 354 TERACRPYLNVLDQWIHKGTIVDPFQEFMIEDNELINKEELPVDYSADYWEKRYCIQSDR 413
RP +LD+W+++G + D +QEF IE + + E L W +Y ++
Sbjct: 356 LNLVARPIRTILDRWVYEGELEDQYQEFFIEVDYTVRDERL--------WFDKYSLRKQM 407
Query: 414 VPKFLD-KFTDIILRTGKYLNVI---SQCGKSISKTNTDEIKYSLREQNYGAI-IQKAYA 468
+P F+ IL GK +N I Q I + + + E+N A +
Sbjct: 408 LPSFIPIDMATKILNIGKSINFIRHVCQDRSPIGTSGEQSLGRTKSEENAAAAQLTADEE 467
Query: 469 FAXXXXXXXXXXXYDLMGR----LKSVKNYFL-MSQGDFIVQFMDATDQELSK 516
F+ Y + + + K FL +GDFI MD + +L+K
Sbjct: 468 FSGPALQEMIDTAYSVTSKKLLEILFTKYQFLDHLKGDFIRHLMDLLEPDLAK 520
>SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)
Length = 1312
Score = 32.7 bits (71), Expect = 1.0
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 2 QSTIKELLDAL---GCNLEADSVFDCIQNDPNYGNCNLSSKQVNEYAQRLALKASNAKAF 58
+S + EL AL G E+D++ I+ D N + +K++ + L + + A
Sbjct: 136 KSLLNELNKALYAGGSEYESDTMTKSIRED-NQTDLRRKNKELRSDVEELQEQVEDMAAL 194
Query: 59 LKKYEELKNRNTDNLSD 75
KK+++LK RN D+L D
Sbjct: 195 AKKHKQLKTRN-DDLQD 210
>SB_5292| Best HMM Match : GlnE (HMM E-Value=1.7)
Length = 325
Score = 31.9 bits (69), Expect = 1.8
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 360 PYLNVLDQWIHKGTIVDPFQE--FMIEDNELINKEELPVDYSADYWEKRYCIQSDRVPKF 417
P+L L+QW++ +I++ F+E F + E+ N+ + ++ + + ++Y I + F
Sbjct: 182 PFLESLEQWLNNPSILNQFKEDDFQLRTREMYNQNCIEIENAEEDITQQYGINQRSILNF 241
Query: 418 LDKF 421
F
Sbjct: 242 TRYF 245
>SB_16342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 30.3 bits (65), Expect = 5.4
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 116 PQIKDKLLKAVDESKKLVMKSFEEKESRLQPTWYSSLDLPNWQKDHPAMSWDFPKDPVPI 175
P+ +DKL+ ++ K E+ R +P W+ L L + D + ++ +P
Sbjct: 89 PEEQDKLIDDRLVDPRIRRKYGEDSYFRTKPEWFPVLKLAHGLSDSEGNAINYATNP--- 145
Query: 176 ISSLAGIPIASQENILIDE 194
S+A + + SQE++ I E
Sbjct: 146 RDSIASVTLTSQEDLRILE 164
>SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43)
Length = 822
Score = 29.9 bits (64), Expect = 7.2
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 630 CKVWLYNKVVKRFSEARLYADAFALRQRMLSCIQHLQYYMCVEV 673
C++ L + VVK EARL + R +QH Q++ CV+V
Sbjct: 542 CQLVLNDIVVKEREEARLRGELKPQRIHHWINLQHCQFHKCVDV 585
>SB_35680| Best HMM Match : Sushi (HMM E-Value=4.4e-22)
Length = 442
Score = 29.9 bits (64), Expect = 7.2
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 397 DYSADYWEKRYCIQSDRVP---KFLDKFTDIILRTGKYLNVISQCGKSISKTNTDEIKYS 453
++ +Y YC RVP K FT++ GK L +I G + D+ Y+
Sbjct: 277 NFPNNYENNEYCTWEIRVPTGKKVRLDFTELRTEEGKDLVIIYDTGDKDDDNDGDDDDYN 336
Query: 454 LREQNYG 460
+ +YG
Sbjct: 337 YNDDDYG 343
>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
Length = 1955
Score = 29.9 bits (64), Expect = 7.2
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 397 DYSADYWEKRYCIQSDRVP---KFLDKFTDIILRTGKYLNVISQCGKSISKTNTDEIKYS 453
++ +Y YC RVP K FT++ GK L +I G + D+ Y+
Sbjct: 1790 NFPNNYENNEYCTWEIRVPTGKKVRLDFTELRTEEGKDLVIIYDTGDKDDDNDGDDDDYN 1849
Query: 454 LREQNYG 460
+ +YG
Sbjct: 1850 YNDDDYG 1856
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.137 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,909,766
Number of Sequences: 59808
Number of extensions: 809156
Number of successful extensions: 2004
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1993
Number of HSP's gapped (non-prelim): 10
length of query: 694
length of database: 16,821,457
effective HSP length: 87
effective length of query: 607
effective length of database: 11,618,161
effective search space: 7052223727
effective search space used: 7052223727
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)
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