Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000978-TA|BGIBMGA000978-PA|undefined
         (158 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   4.9  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   4.9  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   6.5  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 121 ALQLAASRLRENVTGYFAVPIEVSF 145
           +LQ+A  ++  N  G+FA+   + F
Sbjct: 612 SLQIANEQVEFNAAGFFAINYTLVF 636


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 121 ALQLAASRLRENVTGYFAVPIEVSF 145
           +LQ+A  ++  N  G+FA+   + F
Sbjct: 337 SLQIANEQVEFNAAGFFAINYTLVF 361


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 2   DNLVLNQDKRNGRISKLSLGNKITNISPSS 31
           ++ VL        +S L +G KI  + PS+
Sbjct: 114 ESTVLTSTGLRRNLSSLQIGEKIQALDPST 143


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,086
Number of Sequences: 317
Number of extensions: 1297
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 158
length of database: 114,650
effective HSP length: 52
effective length of query: 106
effective length of database: 98,166
effective search space: 10405596
effective search space used: 10405596
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)