GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000978-TA|BGIBMGA000978-PA|undefined
         (158 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5G403 Cluster: Eight transmembrane protein EpsH; n=1; ...    33   3.9  
UniRef50_Q8J222 Cluster: Polyketide synthase 1; n=6; Fungi|Rep: ...    33   3.9  
UniRef50_Q2H4G5 Cluster: Putative uncharacterized protein; n=1; ...    32   6.8  
UniRef50_Q7QRK2 Cluster: GLP_481_24721_24383; n=1; Giardia lambl...    31   9.0  
UniRef50_O17494 Cluster: Integrin subunit betaCn1; n=2; Hexacora...    31   9.0  

>UniRef50_A5G403 Cluster: Eight transmembrane protein EpsH; n=1;
           Geobacter uraniumreducens Rf4|Rep: Eight transmembrane
           protein EpsH - Geobacter uraniumreducens Rf4
          Length = 277

 Score = 32.7 bits (71), Expect = 3.9
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 82  GASWNCHPRTRLRLAPGLMGEITVQIKPRETSPVQLTCAALQLAASRLRENVTGYFAVPI 141
           G  W C     +R+    +G +   + P   S + L    LQL A+R+  N+ GY ++P+
Sbjct: 102 GLIWFCLGSGSIRILAFPIGFLLFMV-PVPYSLMSLVSMPLQLMATRISANLIGYCSIPV 160

Query: 142 --EVSFLNSVMPSLTGEES 158
             E + LN V   L   E+
Sbjct: 161 YREGNMLNFVQTKLEVAEA 179


>UniRef50_Q8J222 Cluster: Polyketide synthase 1; n=6; Fungi|Rep:
            Polyketide synthase 1 - Glarea lozoyensis
          Length = 2124

 Score = 32.7 bits (71), Expect = 3.9
 Identities = 22/80 (27%), Positives = 31/80 (38%)

Query: 79   ARLGASWNCHPRTRLRLAPGLMGEITVQIKPRETSPVQLTCAALQLAASRLRENVTGYFA 138
            ARL ASW  +P   +  + G    + V      +  + L  A  QL   +   N     A
Sbjct: 980  ARLWASWGVNPSVLVGHSLGEYSALCVSGVLSASDTIYLVGARAQLLVEKCTANTHAMLA 1039

Query: 139  VPIEVSFLNSVMPSLTGEES 158
            V   V  LN  +P + G  S
Sbjct: 1040 VQGSVDALNEALPEMAGSLS 1059


>UniRef50_Q2H4G5 Cluster: Putative uncharacterized protein; n=1;
          Chaetomium globosum|Rep: Putative uncharacterized
          protein - Chaetomium globosum (Soil fungus)
          Length = 298

 Score = 31.9 bits (69), Expect = 6.8
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 1  MDNLVLNQDKRNGRISKLSLGNKITNISPSSIR-----PLSITWFPDQLYFAINKKKLTK 55
          MD L   +D+R      +SLG+    I PS  R     PLS+T F   L F +    + +
Sbjct: 1  MDQLANKKDRRLAGFDDVSLGSMCVPIGPSKRRTCYLWPLSLTRFAGGLPFGV--YAIAQ 58

Query: 56 KLRVLNACSNTVYIHCCGL-WNE---KARLGASWNCHPR 90
             +       +++  C + W +     R G  W  HPR
Sbjct: 59 NFNIPLQVQPQIFMALCLVSWAQILLYHRYGTFWGSHPR 97


>UniRef50_Q7QRK2 Cluster: GLP_481_24721_24383; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_481_24721_24383 - Giardia lamblia
           ATCC 50803
          Length = 112

 Score = 31.5 bits (68), Expect = 9.0
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 99  LMGEITVQIKPRETSPVQLTCA--ALQLAASRLRENVTGYFAVPIEVSFLNSVMPSLT 154
           L+  I+   +  +  P  LTC   AL  + S L++ VTGY  + +    +NSVM S T
Sbjct: 53  LLTNISTSSENFQQVPNSLTCVSYALITSVSSLKQVVTGYNVIFVRSGSINSVMVSTT 110


>UniRef50_O17494 Cluster: Integrin subunit betaCn1; n=2;
           Hexacorallia|Rep: Integrin subunit betaCn1 - Acropora
           millepora (Coral)
          Length = 792

 Score = 31.5 bits (68), Expect = 9.0
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 54  TKKLRVLNACSNTVYIHCCGLWNEKARLGASWNCHPRT-RLRLAPGLMGEITVQIKPRET 112
           ++K+  LN CSN           + + +GA     P+  RL L  G   + T+ ++P E 
Sbjct: 56  SQKILELNGCSNISNPKSESKIQQDSNVGAKVQVQPKKIRLNLRAGNPAKFTLTVRPAEN 115

Query: 113 SPVQL 117
            PV L
Sbjct: 116 YPVDL 120


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,755,221
Number of Sequences: 1657284
Number of extensions: 6099975
Number of successful extensions: 13569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 13568
Number of HSP's gapped (non-prelim): 5
length of query: 158
length of database: 575,637,011
effective HSP length: 94
effective length of query: 64
effective length of database: 419,852,315
effective search space: 26870548160
effective search space used: 26870548160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 68 (31.5 bits)