GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000978-TA|BGIBMGA000978-PA|undefined
         (158 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   4.1  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    25   5.4  
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...    25   7.1  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   7.1  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    24   9.4  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 35  LSITWFPDQLYFAINKKKLTKKLRVLNACSNTVYIHCCG-LWNEKARLGASWNCHPRTRL 93
           LS  W P + + +      T K  +++  +NT+ I CC  L NE    G ++  +  T  
Sbjct: 737 LSELWLPQRTFSSKLNLAATPKRLLVDKYTNTLIIGCCHVLVNEITTSGLAF--YDLTNS 794

Query: 94  RLAPGLMGEITVQIKP 109
           RL P     + ++ KP
Sbjct: 795 RLFPVNWPSMDIKGKP 810


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 93  LRLAPGLMGEITVQIKPRETSPVQLTCAALQLAASRLRENVTGYFAVPIEVS 144
           LR    ++ +I V+I+   ++P  L  A  Q     L +NV  +     E+S
Sbjct: 418 LRTYMNILSDINVKIRSPTSTPTPLIDAVKQYICLALAKNVVSHVLPVFEIS 469


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 40 FPDQLYFAINKKKLTKKLRVLNAC 63
          FPD +Y + +KKK + ++  ++ C
Sbjct: 8  FPDSIYLSCSKKKASLRIDRVDGC 31


>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
          Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 49 NKKKLTKKLRVLNACSNTVYIHCCGLWNEKAR 80
          N KKL  +++  +  SN V  +   +W EK R
Sbjct: 49 NNKKLLARVKAFDRHSNMVLENVKEMWTEKKR 80


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 121 ALQLAASRLRENVTGYFAVPIEVSFLNS 148
           A +L   RL+E ++G FA+  E+  LNS
Sbjct: 548 AFELKEERLKEIISGGFALVDELCSLNS 575


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 44  LYFAINKKKLTKKLRVLNACSNTVYIHCCGLWNEKAR 80
           L F    +K+ ++   L  C+N  Y+ CC   ++ +R
Sbjct: 82  LCFICTTEKIKREDYELTLCANCGYLFCCNHESDHSR 118


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 700,128
Number of Sequences: 5004
Number of extensions: 26002
Number of successful extensions: 52
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 7
length of query: 158
length of database: 2,362,478
effective HSP length: 67
effective length of query: 91
effective length of database: 2,027,210
effective search space: 184476110
effective search space used: 184476110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)