GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000978-TA|BGIBMGA000978-PA|undefined
         (158 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366...    29   1.7  
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898...    29   1.7  
02_05_0546 + 29889861-29890182,29891057-29892798                       29   1.7  
02_04_0312 - 21942310-21943356                                         28   4.0  
03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11...    27   5.3  
05_03_0362 - 12973488-12974251,12975346-12975580,12976410-129767...    27   9.3  

>05_07_0212 +
           28434612-28435931,28436012-28436044,28436557-28436670,
           28436767-28437102,28437221-28437283,28437364-28437519,
           28437650-28437715,28439074-28439310,28439403-28439678,
           28440060-28440248,28440459-28440620
          Length = 983

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/45 (40%), Positives = 23/45 (51%)

Query: 89  PRTRLRLAPGLMGEITVQIKPRETSPVQLTCAALQLAASRLRENV 133
           PR R+    GL+ E T   K R  S  +   A LQL AS++ E V
Sbjct: 292 PRRRMPKNDGLVDEDTAVRKGRRWSKAKRRAARLQLEASQVEEPV 336


>04_03_0741 +
           19187333-19188868,19189264-19189490,19189578-19189899,
           19190311-19190399,19190882-19191128,19191756-19191884,
           19191967-19192182,19192256-19192379,19192857-19193095
          Length = 1042

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 1   MDNLVLNQDKRNGRISKLSLGNKITNIS 28
           +DNLV+NQD+    +  +SLG+   N+S
Sbjct: 682 LDNLVMNQDEELFTVRLVSLGSSTANLS 709


>02_05_0546 + 29889861-29890182,29891057-29892798
          Length = 687

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 55  KKLRVLNACSNTVYIHCCGLWNEKARLGASWNCH---PRTRLRLAPGLMGEIT-VQIKPR 110
           + L V +AC    ++ C   +  K    A W+C     +++ +  P   G++T   ++P+
Sbjct: 220 ESLLVCDACEKGAHLKCLQHYGNKGVPKAEWHCPTCLTKSKGKPLPPKYGKVTRTAVEPK 279

Query: 111 ETSPVQLTCAALQLAASRL 129
            T P   T  + Q AA  +
Sbjct: 280 ATPPPAGTQVSSQGAAENI 298


>02_04_0312 - 21942310-21943356
          Length = 348

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 57  LRVLNACSNTVYIHCCGLWNEK 78
           LR+L AC +  +  C GLW EK
Sbjct: 142 LRLLPACPHAFHPECIGLWLEK 163


>03_01_0014 +
           113638-113754,113836-113950,114570-114835,115365-115575,
           115915-115979,118723-118930,119457-119566,119663-119913,
           120250-120356,120442-120509,120624-120701,121070-121198,
           121341-121481,122297-122344,122648-122743,124071-124183,
           124441-124591,124745-124818,124913-125072,125356-125454,
           125532-125618,125761-125907
          Length = 946

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 35  LSITWFPDQLYFAINKKKLTKKLRVLNACSNTVYIHCCGLW 75
           L  +W+    Y  I +++L +K  + N+  +   +HCC  W
Sbjct: 141 LVFSWWLCGTYTGIFRQELQRKYHLKNSPCDPCMVHCCLHW 181


>05_03_0362 -
           12973488-12974251,12975346-12975580,12976410-12976738,
           12977277-12977404,12977695-12977879,12977972-12978165,
           12978239-12978368,12978507-12978566,12979037-12979059,
           12979158-12979218,12979677-12979748,12979804-12979924,
           12980351-12980415,12980973-12981089,12981970-12982239
          Length = 917

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 42  DQLYFAINKKKLTKKLRVLNACSNTVYIHCC 72
           DQ  ++     +TKK RV    + +V IHCC
Sbjct: 330 DQTKWSGGNVHVTKKFRVYTVPTISVLIHCC 360


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,381,984
Number of Sequences: 37544
Number of extensions: 159794
Number of successful extensions: 321
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 316
Number of HSP's gapped (non-prelim): 6
length of query: 158
length of database: 14,793,348
effective HSP length: 76
effective length of query: 82
effective length of database: 11,940,004
effective search space: 979080328
effective search space used: 979080328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)