GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000978-TA|BGIBMGA000978-PA|undefined
         (158 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3082| Best HMM Match : ig (HMM E-Value=1.5e-17)                     35   0.035
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)                    31   0.44 
SB_31963| Best HMM Match : Integrin_beta (HMM E-Value=0)               28   3.1  
SB_43497| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_27663| Best HMM Match : VPEP (HMM E-Value=7.2)                      28   4.1  
SB_47811| Best HMM Match : ig (HMM E-Value=5.2e-13)                    27   9.4  

>SB_3082| Best HMM Match : ig (HMM E-Value=1.5e-17)
          Length = 332

 Score = 34.7 bits (76), Expect = 0.035
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 131 ENVTGYFAVPIEVSFLNSVMPSLTGEES 158
           EN  G+FAV ++VSFLN   P +TG +S
Sbjct: 214 ENKIGFFAVKVKVSFLNIAPPRITGLDS 241


>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
          Length = 1123

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 32  IRPLSITWFPDQLYFAINKKKL-TKKLRVLNACSNTVYIHCCGL-WNEKARLGASW-NCH 88
           +RP+SITW+ +  +F+ N+  + +  L    + S      C     +E+  +  ++ + +
Sbjct: 474 VRPVSITWYKNSEWFSSNRSLIFSGSLNDTGSYSCLAESACNNTKQSERVNITVTYASLN 533

Query: 89  PRTRLRLAPGLMGEITVQIKPRETSPVQLTCAALQLA-ASRLRENVTGYFAVPIE 142
               + LA   +  +TV++K     P  +TC   + +  S   +N    +AVP++
Sbjct: 534 KPNAICLANDALTNVTVEMKTNILQPPVVTCTTGRASLISFSADNKNPSYAVPLK 588


>SB_31963| Best HMM Match : Integrin_beta (HMM E-Value=0)
          Length = 628

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 71  CCGLWNEKARLGASWNCHPR-TRLRLAPGLMGEITVQIKPRETSPVQL 117
           CC    E   +GA +   P+  +++L PG    + + ++P E  PV L
Sbjct: 46  CC----EDVAVGAQYQVSPQQVKVKLRPGAPARLRLTVRPAENYPVDL 89


>SB_43497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 98  GLMGEITVQIKPRETSPVQLTCAA 121
           G+  EITV++ PR T P  +TCAA
Sbjct: 90  GIANEITVKLSPRGTLP-YVTCAA 112



 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 98  GLMGEITVQIKPRETSPVQLTCAA 121
           G+  EITV++ PR T P  +TCAA
Sbjct: 122 GIANEITVKLSPRGTLP-YVTCAA 144



 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)

Query: 98  GLMGEITVQIKPRETSPVQLTCAA 121
           G+  EITV++ PR T P  +TCAA
Sbjct: 154 GIANEITVKLSPRGTLP-YVTCAA 176


>SB_27663| Best HMM Match : VPEP (HMM E-Value=7.2)
          Length = 198

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 65  NTVYIHCCGLWNEKARLGASWNCHPRTRLRLAPGLMGEITV 105
           N VY+   G+      LGA W    RT+L L  G MG+ +V
Sbjct: 141 NAVYVASAGVCGLFLILGAVWEIRRRTKLTLVVG-MGKSSV 180


>SB_47811| Best HMM Match : ig (HMM E-Value=5.2e-13)
          Length = 278

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 8/19 (42%), Positives = 16/19 (84%)

Query: 32  IRPLSITWFPDQLYFAINK 50
           +RP+SITW+ ++ +F+ N+
Sbjct: 224 VRPVSITWYKNREWFSSNR 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,115,952
Number of Sequences: 59808
Number of extensions: 192871
Number of successful extensions: 476
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 9
length of query: 158
length of database: 16,821,457
effective HSP length: 77
effective length of query: 81
effective length of database: 12,216,241
effective search space: 989515521
effective search space used: 989515521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)