GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000978-TA|BGIBMGA000978-PA|undefined
         (158 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88540-1|AAC34137.1|  786|Homo sapiens Toll-like receptor 1 prot...    29   9.5  
D13637-1|BAA02801.2|  789|Homo sapiens KIAA0012 protein.               29   9.5  
BC109094-1|AAI09095.1|  786|Homo sapiens toll-like receptor 1 pr...    29   9.5  
BC109093-1|AAI09094.1|  786|Homo sapiens toll-like receptor 1 pr...    29   9.5  
BC089403-1|AAH89403.1|  786|Homo sapiens toll-like receptor 1 pr...    29   9.5  

>U88540-1|AAC34137.1|  786|Homo sapiens Toll-like receptor 1
           protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 5   VLNQDKRNGRISKLSLGNKITNISPSSIRPLSITWFPDQLYFAINKKKLTKKL 57
           +L + + N ++S L+L N  T  + S IR L + W     YF+I+  KL  +L
Sbjct: 236 ILAKLQTNPKLSSLTLNNIETTWN-SFIRILQLVWHTTVWYFSISNVKLQGQL 287


>D13637-1|BAA02801.2|  789|Homo sapiens KIAA0012 protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 5   VLNQDKRNGRISKLSLGNKITNISPSSIRPLSITWFPDQLYFAINKKKLTKKL 57
           +L + + N ++S L+L N  T  + S IR L + W     YF+I+  KL  +L
Sbjct: 239 ILAKLQTNPKLSNLTLNNIETTWN-SFIRILQLVWHTTVWYFSISNVKLQGQL 290


>BC109094-1|AAI09095.1|  786|Homo sapiens toll-like receptor 1
           protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 5   VLNQDKRNGRISKLSLGNKITNISPSSIRPLSITWFPDQLYFAINKKKLTKKL 57
           +L + + N ++S L+L N  T  + S IR L + W     YF+I+  KL  +L
Sbjct: 236 ILAKLQTNPKLSSLTLNNIETTWN-SFIRILQLVWHTTVWYFSISNVKLQGQL 287


>BC109093-1|AAI09094.1|  786|Homo sapiens toll-like receptor 1
           protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 5   VLNQDKRNGRISKLSLGNKITNISPSSIRPLSITWFPDQLYFAINKKKLTKKL 57
           +L + + N ++S L+L N  T  + S IR L + W     YF+I+  KL  +L
Sbjct: 236 ILAKLQTNPKLSNLTLNNIETTWN-SFIRILQLVWHTTVWYFSISNVKLQGQL 287


>BC089403-1|AAH89403.1|  786|Homo sapiens toll-like receptor 1
           protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 5   VLNQDKRNGRISKLSLGNKITNISPSSIRPLSITWFPDQLYFAINKKKLTKKL 57
           +L + + N ++S L+L N  T  + S IR L + W     YF+I+  KL  +L
Sbjct: 236 ILAKLQTNPKLSSLTLNNIETTWN-SFIRILQLVWHTTVWYFSISNVKLQGQL 287


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,042,926
Number of Sequences: 224733
Number of extensions: 857679
Number of successful extensions: 1340
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1340
Number of HSP's gapped (non-prelim): 5
length of query: 158
length of database: 73,234,838
effective HSP length: 84
effective length of query: 74
effective length of database: 54,357,266
effective search space: 4022437684
effective search space used: 4022437684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)