Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000978-TA|BGIBMGA000978-PA|undefined
(158 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g48030.1 68416.m05236 hypoxia-responsive family protein / zin... 30 0.63
At2g45010.2 68415.m05605 expressed protein weak similarity to PG... 30 0.84
At2g45010.1 68415.m05604 expressed protein weak similarity to PG... 30 0.84
At5g40820.1 68418.m04956 FAT domain-containing protein / phospha... 29 1.5
At5g46240.1 68418.m05691 inward rectifying potassium channel (KA... 28 3.4
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 28 3.4
At5g17550.1 68418.m02059 peroxisomal protein PEX19 family protei... 28 3.4
At1g23330.1 68414.m02917 expressed protein 27 5.9
At1g04360.1 68414.m00426 zinc finger (C3HC4-type RING finger) fa... 27 5.9
>At3g48030.1 68416.m05236 hypoxia-responsive family protein / zinc
finger (C3HC4-type RING finger) family protein similar
to RING-H2 finger protein RHX1a [Arabidopsis thaliana]
GI:3790591; contains Pfam profiles PF00097: Zinc finger
C3HC4 type (RING finger), PF04588: Hypoxia induced
protein conserved region
Length = 349
Score = 30.3 bits (65), Expect = 0.63
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 48 INKKKLTKKLRVLNACSNTVYIHCCGLW 75
+N+ T KLR+L CS+ ++HC W
Sbjct: 211 LNEFSDTDKLRLLPVCSHAFHLHCIDTW 238
>At2g45010.2 68415.m05605 expressed protein weak similarity to
PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
profile PF04749: Protein of unknown function, DUF614
Length = 198
Score = 29.9 bits (64), Expect = 0.84
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 35 LSITWFPDQLYFAINKKKLTKKLRVLNACSNTVYIHCCGLW 75
L W+ +Y + +++L KK + NA + +HCC W
Sbjct: 94 LFFAWWMCGIYSGLFRQELQKKYHLKNAPCDHCMVHCCLHW 134
>At2g45010.1 68415.m05604 expressed protein weak similarity to
PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
profile PF04749: Protein of unknown function, DUF614
Length = 244
Score = 29.9 bits (64), Expect = 0.84
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 35 LSITWFPDQLYFAINKKKLTKKLRVLNACSNTVYIHCCGLW 75
L W+ +Y + +++L KK + NA + +HCC W
Sbjct: 140 LFFAWWMCGIYSGLFRQELQKKYHLKNAPCDHCMVHCCLHW 180
>At5g40820.1 68418.m04956 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
similar to Atr protein [Xenopus laevis] GI:11385422;
contains Pfam profiles PF00454 Phosphatidylinositol 3-
and 4-kinase, PF02259 FAT domain, PF02260 FAT C domain
Length = 2702
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 22 NKITNISPSSIRPLSITWFPDQLYFAINKKKLTKKLRVL 60
N++ + + + PL + W P L FA+N+++ L VL
Sbjct: 988 NELAKLIDTDVVPLIVNWLPRVLAFALNQEEDKNLLSVL 1026
>At5g46240.1 68418.m05691 inward rectifying potassium channel (KAT1)
identical to K+ channel [Arabidopsis thaliana]
gi|1165000|emb|CAA63601; Shaker-type channel (1P/6TM),
PMID:11500563
Length = 677
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 23 KITNISPSSIRPLSITWFPDQLYFAIN 49
KITN + I L + W D LYF+ N
Sbjct: 651 KITNADNAEIDDLDVIWDGDHLYFSSN 677
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 27.9 bits (59), Expect = 3.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 63 CSNTVYIHCCGLWNEKARLGASWNC 87
C+ T++ HC E +G SW C
Sbjct: 1535 CNMTIHSHCSPWEEESTCIGGSWRC 1559
>At5g17550.1 68418.m02059 peroxisomal protein PEX19 family protein
contains Pfam profile: PF04614 Pex19 protein family
Length = 245
Score = 27.9 bits (59), Expect = 3.4
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 6 LNQDKRNGRISKLSLGNKITNISPSSIRPLSITWFPDQLYFAINKKKLTKKLRVLNA 62
LN +RNG + K K T PS ++ L + PD KKK+ K+ V A
Sbjct: 24 LNLTQRNGGVKKEEGDKKETESLPSGVQGLGM-GLPDMRSKKKGKKKIAKEDHVTEA 79
>At1g23330.1 68414.m02917 expressed protein
Length = 471
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 36 SITWFPDQLYFAINKKKLTKKLRVLNACSNTVYIH 70
S+ FP+ YF+ K+ TK L ++ S + IH
Sbjct: 306 SLQTFPNTFYFSYATKRTTKPLGMMTVPSGVMGIH 340
>At1g04360.1 68414.m00426 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 381
Score = 27.1 bits (57), Expect = 5.9
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 48 INKKKLTKKLRVLNACSNTVYIHCCGLWNEKARLGASWNCHPRTRLRL---APGLMGEIT 104
+N+ + +KLR++ C + +I C +W L + NC P R + A + I+
Sbjct: 138 LNEFQEDEKLRIIPNCCHVFHIDCIDIW-----LQGNANC-PLCRTSVSCEASFTLDLIS 191
Query: 105 VQIKPRETSP 114
PRE SP
Sbjct: 192 APSSPRENSP 201
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.133 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,595,648
Number of Sequences: 28952
Number of extensions: 131998
Number of successful extensions: 318
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 9
length of query: 158
length of database: 12,070,560
effective HSP length: 75
effective length of query: 83
effective length of database: 9,899,160
effective search space: 821630280
effective search space used: 821630280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -