Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000977-TA|BGIBMGA000977-PA|IPR010913|Single-stranded DNA
binding, IPR011344|Single-strand binding protein, IPR008994|Nucleic
acid-binding, OB-fold, IPR000424|Single-strand binding
protein/Primosomal replication protein n
         (121 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   1.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   1.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   1.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   1.4  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   4.4  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   4.4  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 30  HPVINFPLATHYSYKYESGDILQRTDWH 57
           HPV + P+  +  ++Y  G  LQ+   H
Sbjct: 766 HPVGSGPMVWYQMFEYAIGHWLQKATEH 793


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 30  HPVINFPLATHYSYKYESGDILQRTDWH 57
           HPV + P+  +  ++Y  G  LQ+   H
Sbjct: 766 HPVGSGPMVWYQMFEYAIGHWLQKATEH 793


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 30  HPVINFPLATHYSYKYESGDILQRTDWH 57
           HPV + P+  +  ++Y  G  LQ+   H
Sbjct: 766 HPVGSGPMVWYQMFEYAIGHWLQKATEH 793


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 30  HPVINFPLATHYSYKYESGDILQRTDWH 57
           HPV + P+  +  ++Y  G  LQ+   H
Sbjct: 766 HPVGSGPMVWYQMFEYAIGHWLQKATEH 793


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory
          receptor candidate 49 protein.
          Length = 418

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 5/12 (41%), Positives = 10/12 (83%)

Query: 32 VINFPLATHYSY 43
          +I FP++ H+S+
Sbjct: 64 IIQFPISAHFSF 75


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory
          receptor candidate 14 protein.
          Length = 374

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 5/12 (41%), Positives = 10/12 (83%)

Query: 32 VINFPLATHYSY 43
          +I FP++ H+S+
Sbjct: 20 IIQFPISAHFSF 31


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,976
Number of Sequences: 317
Number of extensions: 1204
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 121
length of database: 114,650
effective HSP length: 50
effective length of query: 71
effective length of database: 98,800
effective search space:  7014800
effective search space used:  7014800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)