Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000977-TA|BGIBMGA000977-PA|IPR010913|Single-stranded DNA
binding, IPR011344|Single-strand binding protein, IPR008994|Nucleic
acid-binding, OB-fold, IPR000424|Single-strand binding
protein/Primosomal replication protein n
         (121 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49909| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.003
SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.79 
SB_17401| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_48111| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)               27   4.2  
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_34976| Best HMM Match : N_methyl (HMM E-Value=1.7)                  27   4.2  
SB_51910| Best HMM Match : ig (HMM E-Value=4.9e-05)                    26   9.7  
SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               26   9.7  
SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  

>SB_49909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 9  INQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESGDIL 51
          +N V L+G  GADPQ  G++ H      LAT   Y+ +  DI+
Sbjct: 19 LNSVQLIGYTGADPQSFGTDSHSGTRLSLATTSYYRTKDDDII 61


>SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1593

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 19  GADPQKRGSEEHPV---INFPLATHYSYKYESGDILQRTDWHRVSIFKPGLRDTVYKYLK 75
           G   + +G  ++PV   IN PL   YS K  +G++    D  R ++ K       Y +++
Sbjct: 300 GRYQRAQGLADYPVPVMINEPLYIQYSVKSTTGNLSVLADSCRATLTKEPYSSPFYTFIE 359

Query: 76  KG 77
           KG
Sbjct: 360 KG 361


>SB_17401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 5  CITAINQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESGDILQRTDWHRVSI 61
          CIT IN +  L   G+   +  +     +    A + SY      +LQR DW    +
Sbjct: 8  CITVINNIEFLQPGGSTSSRAAAT---AVELQFALYESYYNSLAVVLQRRDWENPGV 61


>SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 25   RGSEEHPV---INFPLATHYSYKYESGDILQRTDWHRVSIFKPGLRDTVYKYLKKG 77
            RG  ++PV   ++ PL   YS K  +G++    D  R ++ K       Y +++KG
Sbjct: 1026 RGLADYPVPAVMDEPLHIQYSVKSTTGNLSVLADSCRATLTKEPYSSPFYTFIEKG 1081


>SB_48111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 72  KYLKKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADDVIFFQSTPY 117
           ++LKK Q+I+V G +S   +K D  + + A  V+  ++I F   PY
Sbjct: 220 RFLKKRQKIFVDGNIS---LKSDAWRFKEAMLVV--NLILFSVVPY 260


>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3307

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 36   PLATHYSYKYESGDILQRTDWHRVSIFKPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDD 95
            PL  +  Y++   D+  R    ++ +F     +  Y+ LK     Y+TG+ +YG    DD
Sbjct: 2615 PLGWNIPYEFNETDL--RISVQQLHMFMNKYDEVQYEALK-----YLTGECNYGGRVTDD 2667

Query: 96   GQVRTASTVI 105
               RT  T++
Sbjct: 2668 RDRRTLLTIL 2677


>SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 75  KKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADDVIF 111
           K G    +T K   G+   ++G+ RT+S +I+ D +F
Sbjct: 418 KNGANFTLTDKWQSGKPTANEGEQRTSSVLISRDYMF 454


>SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)
          Length = 322

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 75  KKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADDVIF 111
           K G    +T K   G+   ++G+ RT+S +I+ D +F
Sbjct: 264 KNGANFTLTDKWQSGKPTANEGEQRTSSVLISRDYMF 300


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 75  KKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADDVIF 111
           K G    +T K   G+   ++G+ RT+S +I+ D +F
Sbjct: 59  KNGANFTLTDKWQSGKPTANEGEQRTSSVLISRDYMF 95



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 75  KKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADDVIF 111
           K G    +T K   G+   ++G+ RT+S +I+ D +F
Sbjct: 260 KNGANFTLTDKWQSGKPTANEGEQRTSSVLISRDYMF 296


>SB_34976| Best HMM Match : N_methyl (HMM E-Value=1.7)
          Length = 177

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 75  KKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADDVIF 111
           K G    +T K   G+   ++G+ RT+S +I+ D +F
Sbjct: 16  KNGANFTLTDKWQSGKPTANEGEQRTSSVLISRDYMF 52


>SB_51910| Best HMM Match : ig (HMM E-Value=4.9e-05)
          Length = 562

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 67  RDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADD 108
           RD    Y    +     G+LS+G  K++ G V + +T IA++
Sbjct: 94  RDKQQYYKAVSEHHSTVGQLSFGLTKIEIGNVFSLATKIAEE 135


>SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 49  DILQRTDWHRVSIFKPGLRDTVYKYLKKGQ 78
           D+   T +H++ ++K  +    Y++L KGQ
Sbjct: 297 DLENITRYHKILVYKGRVNTCYYRFLTKGQ 326


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 7   TAINQVTLLGRVGADPQKRGSE 28
           T  N+V+LL  V  DP K GSE
Sbjct: 968 TTKNKVSLLPNVDTDPNKDGSE 989


>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 24  KRGSEEHPVINFPLATHYSYKYESGD 49
           KRG     +I  P+ATH+ Y   SG+
Sbjct: 678 KRGGPLKRLIPIPVATHHGYGLRSGN 703


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,095,076
Number of Sequences: 59808
Number of extensions: 159216
Number of successful extensions: 779
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 767
Number of HSP's gapped (non-prelim): 15
length of query: 121
length of database: 16,821,457
effective HSP length: 74
effective length of query: 47
effective length of database: 12,395,665
effective search space: 582596255
effective search space used: 582596255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)