Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000977-TA|BGIBMGA000977-PA|IPR010913|Single-stranded DNA
binding, IPR011344|Single-strand binding protein, IPR008994|Nucleic
acid-binding, OB-fold, IPR000424|Single-strand binding
protein/Primosomal replication protein n
         (121 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00025-5|AAA50616.1|  170|Caenorhabditis elegans Hypothetical pr...    55   1e-08
AF226866-1|AAF33845.1|  279|Caenorhabditis elegans cell-corpse e...    29   1.2  
AC024776-8|AAK68463.1|  279|Caenorhabditis elegans Cell death ab...    29   1.2  
U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical pr...    27   2.8  
AF016450-8|AAB65993.1|  578|Caenorhabditis elegans Hypothetical ...    27   3.6  

>U00025-5|AAA50616.1|  170|Caenorhabditis elegans Hypothetical
           protein PAR2.1 protein.
          Length = 170

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 8   AINQVTLLGRVGADP-QKRGSEEHPVINFPLATHYSYKYESGDILQRTDWHRVSIFKPGL 66
           ++N+V L+G V  DP  K G    P + F + T+  +K + G  L +T+ H VS+F    
Sbjct: 53  SVNKVELVGGVALDPLYKTGRNGKPYLIFNIITNSYFKQQDGTTLDQTERHAVSVFGK-Q 111

Query: 67  RDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRT 100
            + + K +KKG R+ V G+L Y   + D+   RT
Sbjct: 112 AEILSKTIKKGSRLMVQGRLHYSGGQKDEQGNRT 145


>AF226866-1|AAF33845.1|  279|Caenorhabditis elegans cell-corpse
           engulfment proteinCED-2 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 64  PGLRDTVYKYLKKGQRIYVTGKLSYGEVKLD-DGQV 98
           P   D     +KKGQ + VT K+S G  K + DGQ+
Sbjct: 229 PNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQI 264


>AC024776-8|AAK68463.1|  279|Caenorhabditis elegans Cell death
           abnormality protein 2 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 64  PGLRDTVYKYLKKGQRIYVTGKLSYGEVKLD-DGQV 98
           P   D     +KKGQ + VT K+S G  K + DGQ+
Sbjct: 229 PNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQI 264


>U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical
           protein F54D8.6 protein.
          Length = 783

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 60  SIFKPGLRDTVYKYLKKGQRIYVTGKLSYGEVKL--DDGQVRTASTVIADDVI 110
           S F PGL  T++  ++K  R+Y   + +  EV+   D+ +  T   V +D VI
Sbjct: 30  SYFVPGLDATIFCKMRKSMRLYRMEEENTPEVQFEQDENEENTLQIVDSDLVI 82


>AF016450-8|AAB65993.1|  578|Caenorhabditis elegans Hypothetical
           protein B0238.7 protein.
          Length = 578

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 55  DWHRVSIFKPGLRDTVYKYLKKGQRIYVTGKLSY 88
           D+   S+F  G  D V  Y+K G ++Y+ G  +Y
Sbjct: 413 DYVSDSVFNSGTLDAVKSYVKYGNKVYL-GSFNY 445


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,356
Number of Sequences: 27539
Number of extensions: 113594
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 5
length of query: 121
length of database: 12,573,161
effective HSP length: 73
effective length of query: 48
effective length of database: 10,562,814
effective search space: 507015072
effective search space used: 507015072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)