Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000977-TA|BGIBMGA000977-PA|IPR010913|Single-stranded DNA
binding, IPR011344|Single-strand binding protein, IPR008994|Nucleic
acid-binding, OB-fold, IPR000424|Single-strand binding
protein/Primosomal replication protein n
         (121 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18580.1 68416.m02362 single-strand-binding family protein co...    34   0.023
At1g31010.1 68414.m03797 expressed protein contains Pfam PF05329...    28   2.0  
At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomerase / F...    27   3.4  
At1g79560.1 68414.m09275 FtsH protease, putative contains simila...    27   3.4  
At5g51920.1 68418.m06441 expressed protein ; expression supporte...    27   4.5  
At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomerase, pu...    27   4.5  
At5g41410.1 68418.m05031 homeodomain protein (BEL1) identical to...    27   4.5  
At1g64660.1 68414.m07330 Cys/Met metabolism pyridoxal-phosphate-...    26   6.0  
At4g20010.1 68417.m02929 expressed protein contains Pfam PF05329...    26   7.9  
At4g17370.1 68417.m02604 oxidoreductase family protein weak simi...    26   7.9  

>At3g18580.1 68416.m02362 single-strand-binding family protein
           contains Pfam domain PF00436: Single-strand binding
           protein family
          Length = 217

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 36  PLATHYSYKYESGDILQRTDWHRVSIFKPGLRDTVYKYLKKGQRIYVTGKL 86
           PL      +Y S   +Q   WHRVS++   L D V K ++ G  IY+ G L
Sbjct: 120 PLINEDPREYASRSAVQ---WHRVSVYPERLADLVLKNVEPGTVIYLEGNL 167


>At1g31010.1 68414.m03797 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 360

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 61  IFKPGLRDTVYKYLKKGQRIYVTGKL 86
           +F+  L  T   YLKK  R+++TG++
Sbjct: 124 LFEGDLAHTANSYLKKNDRVHITGQI 149


>At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomerase /
           FK506-binding protein (ROF1) identical to rotamase FKBP
           (ROF1) GB:U49453 [Arabidopsis thaliana] (Mol. Gen.
           Genet. 252 (5), 510-517 (1996))
          Length = 551

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 41  YSYKYESGDILQRTDWHRVSI----FKPGLRDTVYKYLKKGQRIYVTGKLSYG 89
           +  K E G ++ ++D    ++    F P L   V K +KKG+++ +T K  YG
Sbjct: 180 FEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAV-KTMKKGEKVLLTVKPQYG 231


>At1g79560.1 68414.m09275 FtsH protease, putative contains
           similarity to chloroplast FtsH protease GI:5804782 from
           [Nicotiana tabacum]
          Length = 1008

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 37  LATHYSYKYESGDILQRTDWHRVSIFKPGLRDTVYKYLKKGQRIYVTGKLSYGEVKL 93
           LA H +       +  R DWH  S   PG ++T        + +   G  ++G +K+
Sbjct: 766 LAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAVSVFYPREDMVDQGYTTFGYMKM 822


>At5g51920.1 68418.m06441 expressed protein ; expression supported
           by MPSS
          Length = 570

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 4   ICITAINQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESGDILQRTDWH 57
           +C + + ++   G+ G+  +K+G    P+ +    + Y Y + S  + Q   WH
Sbjct: 250 LCSSKLRKLVTAGKNGSKTKKKGIYVFPLHSRVTGSRYPYLWMS--VAQENGWH 301


>At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomerase,
           putative / FK506-binding protein, putative similar to
           rof1 [Arabidopsis thaliana] GI:1373396
          Length = 578

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 41  YSYKYESGDILQRTDWHRVSI----FKPGLRDTVYKYLKKGQRIYVTGKLSYG 89
           Y  + E G I+ ++D    ++    F P L   V K +K+G+++ +T K  YG
Sbjct: 188 YEARLEDGTIVGKSDGVEFTVKEGHFCPALSKAV-KTMKRGEKVLLTVKPQYG 239


>At5g41410.1 68418.m05031 homeodomain protein (BEL1) identical to
           cDNA homeobox protein (BEL1) GI:28202124
          Length = 611

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 84  GKLSYGEVKLDDGQVRTASTVIADDVIFFQSTPYES 119
           G+L YG   +++G V+ +++++ DD +  Q+ PY +
Sbjct: 567 GQLFYGRDHIEEGPVQYSASMLDDDQV--QNLPYRN 600


>At1g64660.1 68414.m07330 Cys/Met metabolism
           pyridoxal-phosphate-dependent enzyme family protein
           similar to SP|P13254 Methionine gamma-lyase (EC
           4.4.1.11) (L-methioninase) {Pseudomonas putida};
           contains Pfam profile PF01053: Cys/Met metabolism
           PLP-dependent enzyme
          Length = 441

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/66 (25%), Positives = 26/66 (39%)

Query: 31  PVINFPLATHYSYKYESGDILQRTDWHRVSIFKPGLRDTVYKYLKKGQRIYVTGKLSYGE 90
           P +N  +A   S +     +  R   HR  ++   +RD   K +  G   +   KL  G 
Sbjct: 284 PTMNAKVAFELSERIPHLGLRMREHSHRAQVYAERMRDLGMKVIYPGLETHPQHKLFKGM 343

Query: 91  VKLDDG 96
           V  D G
Sbjct: 344 VNRDYG 349


>At4g20010.1 68417.m02929 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 371

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 61  IFKPGLRDTVYKYLKKGQRIYVTGKL 86
           IF+  L  T  +Y+ K  +I+V+GKL
Sbjct: 143 IFEGDLAKTAARYVSKDDQIHVSGKL 168


>At4g17370.1 68417.m02604 oxidoreductase family protein weak
           similarity to SP|P26935 Myo-inositol 2-dehydrogenase (EC
           1.1.1.18). {Bacillus subtilis}; contains Pfam profiles
           PF01408: Oxidoreductase family NAD-binding Rossmann
           fold, PF02894: Oxidoreductase family C-terminal
           alpha/beta domain
          Length = 368

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 75  KKGQRIYVTGKLSYGEVKLDDGQVRTASTV 104
           K  Q I VTG +  GE  + +G VR+ S +
Sbjct: 263 KNEQEISVTGDIGKGEALVPEGIVRSGSRI 292


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,962
Number of Sequences: 28952
Number of extensions: 108020
Number of successful extensions: 211
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 10
length of query: 121
length of database: 12,070,560
effective HSP length: 73
effective length of query: 48
effective length of database: 9,957,064
effective search space: 477939072
effective search space used: 477939072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)