GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000977-TA|BGIBMGA000977-PA|IPR010913|Single-stranded DNA
binding, IPR011344|Single-strand binding protein, IPR008994|Nucleic
acid-binding, OB-fold, IPR000424|Single-strand binding
protein/Primosomal replication protein n
         (121 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   0.62 
SPAC2F3.04c |rim1||mitochondrial single-stranded DNA binding pro...    27   1.1  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    25   4.4  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    25   4.4  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    24   7.6  

>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 12/39 (30%), Positives = 26/39 (66%), Gaps = 4/39 (10%)

Query: 80  IYVTGKLSYGEVKLDDGQVRTASTVIADDVIFFQSTPYE 118
           IY++ ++++    LD+ ++RT++ VI++     Q TP+E
Sbjct: 504 IYISERITFTNQTLDNDELRTSTQVISEG----QGTPFE 538


>SPAC2F3.04c |rim1||mitochondrial single-stranded DNA binding
           protein Rim1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 9   INQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESGDILQRTDWHRVSIFKPGLRD 68
           I ++TL G +  D ++  S++           Y+    +G  +  T +H V +F     D
Sbjct: 25  IQRLTLTGNLTKDVERLQSQKGNEY-----MRYTVASNNGKDVAPT-FHSVYVFDSYNFD 78

Query: 69  TVYKYLKKGQRIYVTGKLSYGEVKL--DDGQVRTASTVIADDVIFF 112
            +   L+KG R+YV     +  V    +  Q + +   ++ DV+F+
Sbjct: 79  RLQTILRKGTRVYVEADAVWRSVPAGNEGSQAKMSLRHVSADVLFY 124


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 62  FKPGLRDTVYKYLKKGQRIYVTGKLSYGEVK 92
           ++P L  T+ +  K G  ++ TGK++   VK
Sbjct: 269 YRPALASTLEEIAKFGPEVFYTGKIAERLVK 299


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 35  FPLATHYSYKYESGDILQRTDWHRV--SIFKPGLRDTVYKYLKKGQRIYVTGKLSYGEV 91
           FP   H   K+E GD+      H++  SI K  + DT     KK    Y   K+++  +
Sbjct: 57  FPNGFHLLLKHEGGDVSSCFKCHKIDPSICK-WILDTYLPLFKKSNNAY-PSKIAFNPI 113


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 2/22 (9%)

Query: 56  WHRVS--IFKPGLRDTVYKYLK 75
           WH      +K G R  VYKYLK
Sbjct: 871 WHDEEHHYYKTGFRKRVYKYLK 892


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,443
Number of Sequences: 5004
Number of extensions: 21255
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 5
length of query: 121
length of database: 2,362,478
effective HSP length: 65
effective length of query: 56
effective length of database: 2,037,218
effective search space: 114084208
effective search space used: 114084208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)