GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000977-TA|BGIBMGA000977-PA|IPR010913|Single-stranded DNA
binding, IPR011344|Single-strand binding protein, IPR008994|Nucleic
acid-binding, OB-fold, IPR000424|Single-strand binding
protein/Primosomal replication protein n
         (121 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    26   0.42 
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    22   5.2  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            22   6.8  

>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 10  NQVTLL-GRVGADPQKRGS--EEHPVINFPLATHYSYKYESGDILQRTDWH 57
           N V+LL GR+  DP    +    HPV   P+  +  ++Y  G  LQ+   H
Sbjct: 402 NAVSLLVGRMKVDPDLGAACGRIHPVGTGPMVWYQIFEYAIGHWLQKATEH 452


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1
           protein.
          Length = 2051

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 8/99 (8%)

Query: 27  SEEHPVINFPLATHYSYKYESGDILQRTDWHR--VSIFKPGLRDTVYKYLKKGQ-RIYVT 83
           S E    NF ++T   YK ++ ++ +R + +R  ++ FK       Y+  K+ Q R+   
Sbjct: 390 SSEEEAENFKISTAEQYKKQAKEVERRGNRNRRDLNAFK---EKQYYEAYKRDQYRLRKQ 446

Query: 84  GKLSYGEVKLDDGQVRTASTVI--ADDVIFFQSTPYESE 120
              S      DD    ++S+    +D+  F+ S+  +S+
Sbjct: 447 NDTSSDSSSSDDSSSSSSSSSSSESDEHDFYSSSESDSD 485


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 37   LATHYSYKYESGDILQRTDW-HRVSIFKPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDD 95
            ++  Y  +  +G +L   D  +  S   P +R T Y Y  +   ++V     YG +   +
Sbjct: 2581 MSEKYYIRDANGLVLMDMDMSYLASDQPPDVRVTSYIYKDQQLIVFVRNDKLYGVITDHE 2640

Query: 96   GQVR 99
            G VR
Sbjct: 2641 GSVR 2644


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,068
Number of Sequences: 2123
Number of extensions: 4297
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 121
length of database: 516,269
effective HSP length: 57
effective length of query: 64
effective length of database: 395,258
effective search space: 25296512
effective search space used: 25296512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)