Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000977-TA|BGIBMGA000977-PA|IPR010913|Single-stranded DNA
binding, IPR011344|Single-strand binding protein, IPR008994|Nucleic
acid-binding, OB-fold, IPR000424|Single-strand binding
protein/Primosomal replication protein n
(121 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M94556-1|AAA36332.1| 148|Homo sapiens single stranded DNA bindi... 113 1e-25
BC000895-1|AAH00895.1| 148|Homo sapiens SSBP1 protein protein. 113 1e-25
AF277319-1|AAK69112.1| 148|Homo sapiens single-stranded DNA-bin... 113 1e-25
BC093054-1|AAH93054.1| 148|Homo sapiens single-stranded DNA bin... 110 1e-24
CR457132-1|CAG33413.1| 112|Homo sapiens ARPP-19 protein. 31 1.3
BC100015-1|AAI00016.1| 112|Homo sapiens ARPP-19 protein protein. 31 1.3
BC003418-1|AAH03418.1| 112|Homo sapiens cyclic AMP phosphoprote... 31 1.3
AL833077-1|CAD89929.1| 133|Homo sapiens hypothetical protein pr... 31 1.3
AJ223091-1|CAA11115.1| 112|Homo sapiens ARPP-19 protein. 31 1.3
AF084555-1|AAD52044.1| 112|Homo sapiens okadaic acid-inducible ... 31 1.3
BC075083-1|AAH75083.1| 450|Homo sapiens phosphodiesterase 7B pr... 29 3.0
BC075082-1|AAH75082.1| 450|Homo sapiens phosphodiesterase 7B pr... 29 3.0
AL360178-1|CAH73075.1| 450|Homo sapiens phosphodiesterase 7B pr... 29 3.0
AL138828-4|CAI95287.1| 450|Homo sapiens phosphodiesterase 7B pr... 29 3.0
AL133319-1|CAH73332.1| 450|Homo sapiens phosphodiesterase 7B pr... 29 3.0
AJ251860-1|CAB92441.1| 450|Homo sapiens phosphodiesterase 7B pr... 29 3.0
AB038040-1|BAA96537.1| 450|Homo sapiens cyclic nucleotide phosp... 29 3.0
X99906-1|CAA68180.1| 121|Homo sapiens alpha endosulfine protein. 29 3.9
CR536578-1|CAG38815.1| 121|Homo sapiens ENSA protein. 29 3.9
CR457130-1|CAG33411.1| 117|Homo sapiens ENSA protein. 29 3.9
CR450305-1|CAG29301.1| 574|Homo sapiens MBD4 protein. 29 3.9
BC068544-1|AAH68544.1| 117|Homo sapiens endosulfine alpha protein. 29 3.9
BC011752-1|AAH11752.1| 574|Homo sapiens MBD4 protein protein. 29 3.9
BC004461-1|AAH04461.1| 121|Homo sapiens endosulfine alpha protein. 29 3.9
BC000436-1|AAH00436.1| 121|Homo sapiens endosulfine alpha protein. 29 3.9
AY326403-4|AAQ73831.1| 117|Homo sapiens endosulfine-alpha varia... 29 3.9
AY326403-2|AAQ73827.1| 121|Homo sapiens endosulfine-alpha varia... 29 3.9
AY326402-1|AAQ73829.1| 117|Homo sapiens endosulfine-alpha varia... 29 3.9
AY221994-1|AAO43053.1| 1964|Homo sapiens heat shock regulated-1 ... 29 3.9
AM180876-1|CAJ55826.1| 262|Homo sapiens putative methyl-CpG bin... 29 3.9
AL356356-23|CAI15511.1| 117|Homo sapiens endosulfine alpha prot... 29 3.9
AL356356-21|CAI15509.1| 121|Homo sapiens endosulfine alpha prot... 29 3.9
AL356356-19|CAI15507.1| 113|Homo sapiens endosulfine alpha prot... 29 3.9
AL356356-18|CAI15505.1| 117|Homo sapiens endosulfine alpha prot... 29 3.9
AL117428-1|CAB55917.1| 591|Homo sapiens hypothetical protein pr... 29 3.9
AK074130-1|BAB84956.1| 1457|Homo sapiens FLJ00203 protein protein. 29 3.9
AK023766-1|BAB14671.1| 892|Homo sapiens protein ( Homo sapiens ... 29 3.9
AJ010966-1|CAB65125.1| 121|Homo sapiens alpha endosulfine protein. 29 3.9
AF532602-1|AAP97338.1| 540|Homo sapiens methyl-CpG binding doma... 29 3.9
AF494057-1|AAM00008.1| 580|Homo sapiens methyl-CpG binding doma... 29 3.9
AF157510-1|AAF80341.1| 117|Homo sapiens beta endosulfine protein. 29 3.9
AF157509-1|AAF80340.1| 121|Homo sapiens alpha endosulfine protein. 29 3.9
AF120999-1|AAD50374.1| 580|Homo sapiens methyl-CpG binding prot... 29 3.9
AF114784-1|AAD22195.1| 580|Homo sapiens methyl-CpG binding endo... 29 3.9
AF072250-1|AAC68879.1| 580|Homo sapiens methyl-CpG binding prot... 29 3.9
AB037831-1|BAA92648.2| 4355|Homo sapiens KIAA1410 protein protein. 29 3.9
>M94556-1|AAA36332.1| 148|Homo sapiens single stranded DNA binding
protein protein.
Length = 148
Score = 113 bits (272), Expect = 1e-25
Identities = 56/120 (46%), Positives = 79/120 (65%), Gaps = 7/120 (5%)
Query: 8 AINQVTLLGRVGADPQKRGSE-EHPVINFPLATHYSYK------YESGDILQRTDWHRVS 60
++N+V LLGRVG DP R E ++PV F LAT+ ++ Y+ GD+ Q+T WHR+S
Sbjct: 29 SLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRIS 88
Query: 61 IFKPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADDVIFFQSTPYESE 120
+F+PGLRD Y+Y+KKG RIY+ GK+ YGE + R A+T+IAD++IF E E
Sbjct: 89 VFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTKEKE 148
>BC000895-1|AAH00895.1| 148|Homo sapiens SSBP1 protein protein.
Length = 148
Score = 113 bits (272), Expect = 1e-25
Identities = 56/120 (46%), Positives = 79/120 (65%), Gaps = 7/120 (5%)
Query: 8 AINQVTLLGRVGADPQKRGSE-EHPVINFPLATHYSYK------YESGDILQRTDWHRVS 60
++N+V LLGRVG DP R E ++PV F LAT+ ++ Y+ GD+ Q+T WHR+S
Sbjct: 29 SLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRIS 88
Query: 61 IFKPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADDVIFFQSTPYESE 120
+F+PGLRD Y+Y+KKG RIY+ GK+ YGE + R A+T+IAD++IF E E
Sbjct: 89 VFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTKEKE 148
>AF277319-1|AAK69112.1| 148|Homo sapiens single-stranded
DNA-binding protein protein.
Length = 148
Score = 113 bits (272), Expect = 1e-25
Identities = 56/120 (46%), Positives = 79/120 (65%), Gaps = 7/120 (5%)
Query: 8 AINQVTLLGRVGADPQKRGSE-EHPVINFPLATHYSYK------YESGDILQRTDWHRVS 60
++N+V LLGRVG DP R E ++PV F LAT+ ++ Y+ GD+ Q+T WHR+S
Sbjct: 29 SLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRIS 88
Query: 61 IFKPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADDVIFFQSTPYESE 120
+F+PGLRD Y+Y+KKG RIY+ GK+ YGE + R A+T+IAD++IF E E
Sbjct: 89 VFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTKEKE 148
>BC093054-1|AAH93054.1| 148|Homo sapiens single-stranded DNA
binding protein 1 protein.
Length = 148
Score = 110 bits (264), Expect = 1e-24
Identities = 55/120 (45%), Positives = 78/120 (65%), Gaps = 7/120 (5%)
Query: 8 AINQVTLLGRVGADPQKRGSE-EHPVINFPLATHYSYK------YESGDILQRTDWHRVS 60
++N+V LLGRVG DP R E ++PV F LAT+ ++ Y+ GD+ Q+T WHR+S
Sbjct: 29 SLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRIS 88
Query: 61 IFKPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADDVIFFQSTPYESE 120
+F+PGLRD Y+Y+KK RIY+ GK+ YGE + R A+T+IAD++IF E E
Sbjct: 89 VFRPGLRDVAYQYVKKRSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTKEKE 148
>CR457132-1|CAG33413.1| 112|Homo sapiens ARPP-19 protein.
Length = 112
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTAS 102
KPG D + K L+KGQ+ + +G + + K+ + Q+ TA+
Sbjct: 42 KPGGSDFLRKRLQKGQKYFDSGDYNMAKAKMKNKQLPTAA 81
>BC100015-1|AAI00016.1| 112|Homo sapiens ARPP-19 protein protein.
Length = 112
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTAS 102
KPG D + K L+KGQ+ + +G + + K+ + Q+ TA+
Sbjct: 42 KPGGSDFLRKRLQKGQKYFDSGDYNMAKAKMKNKQLPTAA 81
>BC003418-1|AAH03418.1| 112|Homo sapiens cyclic AMP phosphoprotein,
19 kD protein.
Length = 112
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTAS 102
KPG D + K L+KGQ+ + +G + + K+ + Q+ TA+
Sbjct: 42 KPGGSDFLRKRLQKGQKYFDSGDYNMAKAKMKNKQLPTAA 81
>AL833077-1|CAD89929.1| 133|Homo sapiens hypothetical protein
protein.
Length = 133
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTAS 102
KPG D + K L+KGQ+ + +G + + K+ + Q+ TA+
Sbjct: 63 KPGGSDFLRKRLQKGQKYFDSGDYNMAKAKMKNKQLPTAA 102
>AJ223091-1|CAA11115.1| 112|Homo sapiens ARPP-19 protein.
Length = 112
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTAS 102
KPG D + K L+KGQ+ + +G + + K+ + Q+ TA+
Sbjct: 42 KPGGSDFLRKRLQKGQKYFDSGDYNMAKAKMKNKQLPTAA 81
>AF084555-1|AAD52044.1| 112|Homo sapiens okadaic acid-inducible and
cAMP-regulated phosphoprotein 19 protein.
Length = 112
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTAS 102
KPG D + K L+KGQ+ + +G + + K+ + Q+ TA+
Sbjct: 42 KPGGSDFLRKRLQKGQKYFDSGDYNMAKAKMKNKQLPTAA 81
>BC075083-1|AAH75083.1| 450|Homo sapiens phosphodiesterase 7B
protein.
Length = 450
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 5 CITAINQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESG 48
C+ + + L G+ G ++RGS +P I+F L +Y E G
Sbjct: 23 CVCMLGDIRLRGQTGVRAERRGS--YPFIDFRLLNSTTYSGEIG 64
>BC075082-1|AAH75082.1| 450|Homo sapiens phosphodiesterase 7B
protein.
Length = 450
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 5 CITAINQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESG 48
C+ + + L G+ G ++RGS +P I+F L +Y E G
Sbjct: 23 CVCMLGDIRLRGQTGVRAERRGS--YPFIDFRLLNSTTYSGEIG 64
>AL360178-1|CAH73075.1| 450|Homo sapiens phosphodiesterase 7B
protein.
Length = 450
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 5 CITAINQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESG 48
C+ + + L G+ G ++RGS +P I+F L +Y E G
Sbjct: 23 CVCMLGDIRLRGQTGVRAERRGS--YPFIDFRLLNSTTYSGEIG 64
>AL138828-4|CAI95287.1| 450|Homo sapiens phosphodiesterase 7B
protein.
Length = 450
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 5 CITAINQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESG 48
C+ + + L G+ G ++RGS +P I+F L +Y E G
Sbjct: 23 CVCMLGDIRLRGQTGVRAERRGS--YPFIDFRLLNSTTYSGEIG 64
>AL133319-1|CAH73332.1| 450|Homo sapiens phosphodiesterase 7B
protein.
Length = 450
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 5 CITAINQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESG 48
C+ + + L G+ G ++RGS +P I+F L +Y E G
Sbjct: 23 CVCMLGDIRLRGQTGVRAERRGS--YPFIDFRLLNSTTYSGEIG 64
>AJ251860-1|CAB92441.1| 450|Homo sapiens phosphodiesterase 7B
protein.
Length = 450
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 5 CITAINQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESG 48
C+ + + L G+ G ++RGS +P I+F L +Y E G
Sbjct: 23 CVCMLGDIRLRGQTGVRAERRGS--YPFIDFRLLNSTTYSGEIG 64
>AB038040-1|BAA96537.1| 450|Homo sapiens cyclic nucleotide
phosphodiesterase 7B protein.
Length = 450
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 5 CITAINQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESG 48
C+ + + L G+ G ++RGS +P I+F L +Y E G
Sbjct: 23 CVCMLGDIRLRGQTGVRAERRGS--YPFIDFRLLNSTTYSGEIG 64
>X99906-1|CAA68180.1| 121|Homo sapiens alpha endosulfine protein.
Length = 121
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTA 101
KPG D + K L+KGQ+ + +G + + K+ + Q+ +A
Sbjct: 47 KPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSA 85
>CR536578-1|CAG38815.1| 121|Homo sapiens ENSA protein.
Length = 121
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTA 101
KPG D + K L+KGQ+ + +G + + K+ + Q+ +A
Sbjct: 47 KPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSA 85
>CR457130-1|CAG33411.1| 117|Homo sapiens ENSA protein.
Length = 117
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTA 101
KPG D + K L+KGQ+ + +G + + K+ + Q+ +A
Sbjct: 47 KPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSA 85
>CR450305-1|CAG29301.1| 574|Homo sapiens MBD4 protein.
Length = 574
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 36 PLATHYSYKYESGDILQRTDWHRVS-IFKP-GLRDTVYKYLKKGQRIYVTGKLSY 88
P+ + KY S ++ + DW VS + KP GL D K + K Y+T + Y
Sbjct: 470 PVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKY 524
>BC068544-1|AAH68544.1| 117|Homo sapiens endosulfine alpha protein.
Length = 117
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTA 101
KPG D + K L+KGQ+ + +G + + K+ + Q+ +A
Sbjct: 47 KPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSA 85
>BC011752-1|AAH11752.1| 574|Homo sapiens MBD4 protein protein.
Length = 574
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 36 PLATHYSYKYESGDILQRTDWHRVS-IFKP-GLRDTVYKYLKKGQRIYVTGKLSY 88
P+ + KY S ++ + DW VS + KP GL D K + K Y+T + Y
Sbjct: 470 PVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKY 524
>BC004461-1|AAH04461.1| 121|Homo sapiens endosulfine alpha protein.
Length = 121
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTA 101
KPG D + K L+KGQ+ + +G + + K+ + Q+ +A
Sbjct: 47 KPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSA 85
>BC000436-1|AAH00436.1| 121|Homo sapiens endosulfine alpha protein.
Length = 121
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTA 101
KPG D + K L+KGQ+ + +G + + K+ + Q+ +A
Sbjct: 47 KPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSA 85
>AY326403-4|AAQ73831.1| 117|Homo sapiens endosulfine-alpha variant
5 protein.
Length = 117
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTA 101
KPG D + K L+KGQ+ + +G + + K+ + Q+ +A
Sbjct: 43 KPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSA 81
>AY326403-2|AAQ73827.1| 121|Homo sapiens endosulfine-alpha variant
1 protein.
Length = 121
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTA 101
KPG D + K L+KGQ+ + +G + + K+ + Q+ +A
Sbjct: 47 KPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSA 85
>AY326402-1|AAQ73829.1| 117|Homo sapiens endosulfine-alpha variant
3 protein.
Length = 117
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTA 101
KPG D + K L+KGQ+ + +G + + K+ + Q+ +A
Sbjct: 47 KPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSA 85
>AY221994-1|AAO43053.1| 1964|Homo sapiens heat shock regulated-1
protein.
Length = 1964
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 36 PLATHYSYKYESGDILQRTDWHRVSIFKPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDD 95
PL + Y++ GD+ R ++ +F D YK LK Y G+++YG DD
Sbjct: 1604 PLGFNIPYEFTDGDL--RICISQLKMFLDEYDDIPYKVLK-----YTAGEINYGGRVTDD 1656
Query: 96 GQVRTASTVIAD 107
R ++ D
Sbjct: 1657 WDRRCIMNILED 1668
>AM180876-1|CAJ55826.1| 262|Homo sapiens putative methyl-CpG
binding protein protein.
Length = 262
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 36 PLATHYSYKYESGDILQRTDWHRVS-IFKP-GLRDTVYKYLKKGQRIYVTGKLSY 88
P+ + KY S ++ + DW VS + KP GL D K + K Y+T + Y
Sbjct: 158 PVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKY 212
>AL356356-23|CAI15511.1| 117|Homo sapiens endosulfine alpha
protein.
Length = 117
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTA 101
KPG D + K L+KGQ+ + +G + + K+ + Q+ +A
Sbjct: 47 KPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSA 85
>AL356356-21|CAI15509.1| 121|Homo sapiens endosulfine alpha
protein.
Length = 121
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTA 101
KPG D + K L+KGQ+ + +G + + K+ + Q+ +A
Sbjct: 47 KPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSA 85
>AL356356-19|CAI15507.1| 113|Homo sapiens endosulfine alpha
protein.
Length = 113
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTA 101
KPG D + K L+KGQ+ + +G + + K+ + Q+ +A
Sbjct: 43 KPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSA 81
>AL356356-18|CAI15505.1| 117|Homo sapiens endosulfine alpha
protein.
Length = 117
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTA 101
KPG D + K L+KGQ+ + +G + + K+ + Q+ +A
Sbjct: 43 KPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSA 81
>AL117428-1|CAB55917.1| 591|Homo sapiens hypothetical protein
protein.
Length = 591
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 36 PLATHYSYKYESGDILQRTDWHRVSIFKPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDD 95
PL + Y++ GD+ R ++ +F D YK LK Y G+++YG DD
Sbjct: 162 PLGFNIPYEFTDGDL--RICISQLKMFLDEYDDIPYKVLK-----YTAGEINYGGRVTDD 214
Query: 96 GQVRTASTVIAD 107
R ++ D
Sbjct: 215 WDRRCIMNILED 226
>AK074130-1|BAB84956.1| 1457|Homo sapiens FLJ00203 protein protein.
Length = 1457
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 36 PLATHYSYKYESGDILQRTDWHRVSIFKPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDD 95
PL + Y++ GD+ R ++ +F D YK LK Y G+++YG DD
Sbjct: 1097 PLGFNIPYEFTDGDL--RICISQLKMFLDEYDDIPYKVLK-----YTAGEINYGGRVTDD 1149
Query: 96 GQVRTASTVIAD 107
R ++ D
Sbjct: 1150 WDRRCIMNILED 1161
>AK023766-1|BAB14671.1| 892|Homo sapiens protein ( Homo sapiens
cDNA FLJ13704 fis, clone PLACE2000274, weakly similar to
DYNEIN BETA CHAIN, CILIARY. ).
Length = 892
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 36 PLATHYSYKYESGDILQRTDWHRVSIFKPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDD 95
PL + Y++ GD+ R ++ +F D YK LK Y G+++YG DD
Sbjct: 590 PLGFNIPYEFTDGDL--RICISQLKMFLDEYDDIPYKVLK-----YTAGEINYGGRVTDD 642
Query: 96 GQVRTASTVIAD 107
R ++ D
Sbjct: 643 WDRRCIMNILED 654
>AJ010966-1|CAB65125.1| 121|Homo sapiens alpha endosulfine protein.
Length = 121
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTA 101
KPG D + K L+KGQ+ + +G + + K+ + Q+ +A
Sbjct: 47 KPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSA 85
>AF532602-1|AAP97338.1| 540|Homo sapiens methyl-CpG binding domain
protein 4 variant protein.
Length = 540
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 36 PLATHYSYKYESGDILQRTDWHRVS-IFKP-GLRDTVYKYLKKGQRIYVTGKLSY 88
P+ + KY S ++ + DW VS + KP GL D K + K Y+T + Y
Sbjct: 476 PVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKY 530
>AF494057-1|AAM00008.1| 580|Homo sapiens methyl-CpG binding domain
protein 4 protein.
Length = 580
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 36 PLATHYSYKYESGDILQRTDWHRVS-IFKP-GLRDTVYKYLKKGQRIYVTGKLSY 88
P+ + KY S ++ + DW VS + KP GL D K + K Y+T + Y
Sbjct: 476 PVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKY 530
>AF157510-1|AAF80341.1| 117|Homo sapiens beta endosulfine protein.
Length = 117
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTA 101
KPG D + K L+KGQ+ + +G + + K+ + Q+ +A
Sbjct: 47 KPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSA 85
>AF157509-1|AAF80340.1| 121|Homo sapiens alpha endosulfine protein.
Length = 121
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 63 KPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTA 101
KPG D + K L+KGQ+ + +G + + K+ + Q+ +A
Sbjct: 47 KPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSA 85
>AF120999-1|AAD50374.1| 580|Homo sapiens methyl-CpG binding protein
4 protein.
Length = 580
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 36 PLATHYSYKYESGDILQRTDWHRVS-IFKP-GLRDTVYKYLKKGQRIYVTGKLSY 88
P+ + KY S ++ + DW VS + KP GL D K + K Y+T + Y
Sbjct: 476 PVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKY 530
>AF114784-1|AAD22195.1| 580|Homo sapiens methyl-CpG binding
endonuclease protein.
Length = 580
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 36 PLATHYSYKYESGDILQRTDWHRVS-IFKP-GLRDTVYKYLKKGQRIYVTGKLSY 88
P+ + KY S ++ + DW VS + KP GL D K + K Y+T + Y
Sbjct: 476 PVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKY 530
>AF072250-1|AAC68879.1| 580|Homo sapiens methyl-CpG binding protein
MBD4 protein.
Length = 580
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 36 PLATHYSYKYESGDILQRTDWHRVS-IFKP-GLRDTVYKYLKKGQRIYVTGKLSY 88
P+ + KY S ++ + DW VS + KP GL D K + K Y+T + Y
Sbjct: 476 PVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKY 530
>AB037831-1|BAA92648.2| 4355|Homo sapiens KIAA1410 protein protein.
Length = 4355
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 36 PLATHYSYKYESGDILQRTDWHRVSIFKPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDD 95
PL + Y++ GD+ R ++ +F D YK LK Y G+++YG DD
Sbjct: 3926 PLGFNIPYEFTDGDL--RICISQLKMFLDEYDDIPYKVLK-----YTAGEINYGGRVTDD 3978
Query: 96 GQVRTASTVIAD 107
R ++ D
Sbjct: 3979 WDRRCIMNILED 3990
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.319 0.137 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,375,625
Number of Sequences: 224733
Number of extensions: 626390
Number of successful extensions: 887
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 46
length of query: 121
length of database: 73,234,838
effective HSP length: 81
effective length of query: 40
effective length of database: 55,031,465
effective search space: 2201258600
effective search space used: 2201258600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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