Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000977-TA|BGIBMGA000977-PA|IPR010913|Single-stranded DNA
binding, IPR011344|Single-strand binding protein, IPR008994|Nucleic
acid-binding, OB-fold, IPR000424|Single-strand binding
protein/Primosomal replication protein n
(121 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00669-1|AAA20507.1| 140|Drosophila melanogaster mitochondrial ... 156 6e-39
BT016028-1|AAV36913.2| 146|Drosophila melanogaster RE09167p pro... 156 6e-39
AF181084-1|AAF16936.1| 140|Drosophila melanogaster single-stran... 156 6e-39
AE014297-2167|ABC66178.1| 146|Drosophila melanogaster CG4337-PB... 156 6e-39
AE014297-2166|AAF55287.2| 146|Drosophila melanogaster CG4337-PA... 156 6e-39
AY119533-1|AAM50187.1| 1058|Drosophila melanogaster GH18077p pro... 27 8.9
AE014134-2086|AAF53112.4| 1058|Drosophila melanogaster CG6614-PA... 27 8.9
>U00669-1|AAA20507.1| 140|Drosophila melanogaster mitochondrial
single-strandedDNA-binding protein protein.
Length = 140
Score = 156 bits (379), Expect = 6e-39
Identities = 67/105 (63%), Positives = 86/105 (81%)
Query: 9 INQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESGDILQRTDWHRVSIFKPGLRD 68
+N VT+LGRVGADPQ RGS+EHPV+ F +ATH +YKYE+GD QRTDWHRV +FKP LRD
Sbjct: 32 VNTVTILGRVGADPQLRGSQEHPVVTFSVATHTNYKYENGDWAQRTDWHRVVVFKPNLRD 91
Query: 69 TVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADDVIFFQ 113
TV +YLKKGQR V GK++YGE+ G +T++++IADDV+FF+
Sbjct: 92 TVLEYLKKGQRTMVQGKITYGEITDQQGNQKTSTSIIADDVLFFR 136
>BT016028-1|AAV36913.2| 146|Drosophila melanogaster RE09167p
protein.
Length = 146
Score = 156 bits (379), Expect = 6e-39
Identities = 67/105 (63%), Positives = 86/105 (81%)
Query: 9 INQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESGDILQRTDWHRVSIFKPGLRD 68
+N VT+LGRVGADPQ RGS+EHPV+ F +ATH +YKYE+GD QRTDWHRV +FKP LRD
Sbjct: 38 VNTVTILGRVGADPQLRGSQEHPVVTFSVATHTNYKYENGDWAQRTDWHRVVVFKPNLRD 97
Query: 69 TVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADDVIFFQ 113
TV +YLKKGQR V GK++YGE+ G +T++++IADDV+FF+
Sbjct: 98 TVLEYLKKGQRTMVQGKITYGEITDQQGNQKTSTSIIADDVLFFR 142
>AF181084-1|AAF16936.1| 140|Drosophila melanogaster single-strand
specific DNA-bindingprotein protein.
Length = 140
Score = 156 bits (379), Expect = 6e-39
Identities = 67/105 (63%), Positives = 86/105 (81%)
Query: 9 INQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESGDILQRTDWHRVSIFKPGLRD 68
+N VT+LGRVGADPQ RGS+EHPV+ F +ATH +YKYE+GD QRTDWHRV +FKP LRD
Sbjct: 32 VNTVTILGRVGADPQLRGSQEHPVVTFSVATHTNYKYENGDWAQRTDWHRVVVFKPNLRD 91
Query: 69 TVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADDVIFFQ 113
TV +YLKKGQR V GK++YGE+ G +T++++IADDV+FF+
Sbjct: 92 TVLEYLKKGQRTMVQGKITYGEITDQQGNQKTSTSIIADDVLFFR 136
>AE014297-2167|ABC66178.1| 146|Drosophila melanogaster CG4337-PB,
isoform B protein.
Length = 146
Score = 156 bits (379), Expect = 6e-39
Identities = 67/105 (63%), Positives = 86/105 (81%)
Query: 9 INQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESGDILQRTDWHRVSIFKPGLRD 68
+N VT+LGRVGADPQ RGS+EHPV+ F +ATH +YKYE+GD QRTDWHRV +FKP LRD
Sbjct: 38 VNTVTILGRVGADPQLRGSQEHPVVTFSVATHTNYKYENGDWAQRTDWHRVVVFKPNLRD 97
Query: 69 TVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADDVIFFQ 113
TV +YLKKGQR V GK++YGE+ G +T++++IADDV+FF+
Sbjct: 98 TVLEYLKKGQRTMVQGKITYGEITDQQGNQKTSTSIIADDVLFFR 142
>AE014297-2166|AAF55287.2| 146|Drosophila melanogaster CG4337-PA,
isoform A protein.
Length = 146
Score = 156 bits (379), Expect = 6e-39
Identities = 67/105 (63%), Positives = 86/105 (81%)
Query: 9 INQVTLLGRVGADPQKRGSEEHPVINFPLATHYSYKYESGDILQRTDWHRVSIFKPGLRD 68
+N VT+LGRVGADPQ RGS+EHPV+ F +ATH +YKYE+GD QRTDWHRV +FKP LRD
Sbjct: 38 VNTVTILGRVGADPQLRGSQEHPVVTFSVATHTNYKYENGDWAQRTDWHRVVVFKPNLRD 97
Query: 69 TVYKYLKKGQRIYVTGKLSYGEVKLDDGQVRTASTVIADDVIFFQ 113
TV +YLKKGQR V GK++YGE+ G +T++++IADDV+FF+
Sbjct: 98 TVLEYLKKGQRTMVQGKITYGEITDQQGNQKTSTSIIADDVLFFR 142
>AY119533-1|AAM50187.1| 1058|Drosophila melanogaster GH18077p
protein.
Length = 1058
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 50 ILQRTDWHRVSIFKPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDD 95
ILQR + I K ++VY LK+ ++++ G + Y + D+
Sbjct: 852 ILQRQIDDKFQIIKMPTDNSVYGKLKRCYQLHINGSVEYSRGRCDE 897
>AE014134-2086|AAF53112.4| 1058|Drosophila melanogaster CG6614-PA
protein.
Length = 1058
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 50 ILQRTDWHRVSIFKPGLRDTVYKYLKKGQRIYVTGKLSYGEVKLDD 95
ILQR + I K ++VY LK+ ++++ G + Y + D+
Sbjct: 852 ILQRQIDDKFQIIKMPTDNSVYGKLKRCYQLHINGSVEYSRGRCDE 897
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.319 0.137 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,791,074
Number of Sequences: 52641
Number of extensions: 215678
Number of successful extensions: 424
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 7
length of query: 121
length of database: 24,830,863
effective HSP length: 76
effective length of query: 45
effective length of database: 20,830,147
effective search space: 937356615
effective search space used: 937356615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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