GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000976-TA|BGIBMGA000976-PA|undefined
         (1465 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    25   5.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    25   5.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   5.0  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   6.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    24   6.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    24   6.6  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
            acetylcholine receptor subunitalpha 6 transcript variant
            3 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 1426 NELLADEAWLSQLFRDVRHSWAEAE 1450
            N++L   AWL+  + D    W E+E
Sbjct: 47   NQILTTNAWLNLEWNDYNLKWNESE 71


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
            acetylcholine receptor subunitalpha 6 transcript variant
            2 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 1426 NELLADEAWLSQLFRDVRHSWAEAE 1450
            N++L   AWL+  + D    W E+E
Sbjct: 47   NQILTTNAWLNLEWNDYNLKWNESE 71


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
            acetylcholine receptor subunitalpha 6 transcript variant
            1 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 1426 NELLADEAWLSQLFRDVRHSWAEAE 1450
            N++L   AWL+  + D    W E+E
Sbjct: 47   NQILTTNAWLNLEWNDYNLKWNESE 71


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
            acetylcholine receptor subunitalpha 6 transcript variant
            5 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 6.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 1426 NELLADEAWLSQLFRDVRHSWAEAE 1450
            N+LL    WLS  + D    W E+E
Sbjct: 47   NQLLITNIWLSLEWNDYNLKWNESE 71


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
            acetylcholine receptor subunitalpha 6 transcript variant
            4 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 6.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 1426 NELLADEAWLSQLFRDVRHSWAEAE 1450
            N+LL    WLS  + D    W E+E
Sbjct: 47   NQLLITNIWLSLEWNDYNLKWNESE 71


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 24.2 bits (50), Expect = 6.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 879 SVPVTGPGSGFMASYLKFLQGERDTS 904
           S+P   P  GF+  +L  LQG  D S
Sbjct: 200 SLPSISPSGGFLPKWLPPLQGFSDPS 225


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.127    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,731
Number of Sequences: 317
Number of extensions: 10071
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 7
length of query: 1465
length of database: 114,650
effective HSP length: 66
effective length of query: 1399
effective length of database: 93,728
effective search space: 131125472
effective search space used: 131125472
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 49 (23.8 bits)