GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000976-TA|BGIBMGA000976-PA|undefined
         (1465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0981 + 9931542-9931606,9931779-9933105                           38   0.060
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395...    33   1.7  
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175...    32   3.0  
02_03_0226 - 16591383-16592030,16592132-16592211,16592246-165929...    32   4.0  
01_06_0781 + 31962661-31963089,31963174-31963228,31964310-319645...    31   5.2  
05_03_0565 - 15509949-15511304                                         31   9.1  
05_03_0343 + 12732673-12732792,12732903-12733091,12733220-127333...    31   9.1  
02_02_0224 - 8033098-8034552                                           31   9.1  

>12_01_0981 + 9931542-9931606,9931779-9933105
          Length = 463

 Score = 37.9 bits (84), Expect = 0.060
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 719 PPPAHSSTTNQQQNGSYFDFERWNLPPPPPKMFPGASAFGSHATNFANQHQALAMPHGHA 778
           PPP H  TT  ++N S F F    +PPPPP  FP    +      F  Q Q    PH   
Sbjct: 50  PPPNHIPTT--ERNTSVF-FNTSTIPPPPPPHFPQPPQYTPLNQFFPYQPQYPYQPH--- 103

Query: 779 LTYFP---PFHLGPHP 791
            T FP    +H  P+P
Sbjct: 104 -TPFPVPWDYHYYPNP 118


>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
            29039684-29039741,29039829-29039905,29040004-29040214,
            29040339-29040386,29042496-29042608,29043270-29043341,
            29044372-29046336,29046434-29046641,29046847-29047165,
            29047813-29047937,29048024-29048157,29049089-29049164,
            29049276-29049428,29049829-29050532,29050636-29050811,
            29050945-29051107,29051199-29051341,29051802-29051914,
            29053113-29053237,29053867-29054016,29054753-29054921,
            29055201-29055418,29055499-29055709
          Length = 2135

 Score = 33.1 bits (72), Expect = 1.7
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 955  PSSNV---INTGMSLGNQVMSSSASMSTTGLLGANQVHSGSSNLLNSQ-GKG 1002
            P+SN+   I+   S  N V  S A  +T+  LG++   S SSN +N+Q GKG
Sbjct: 524  PASNLKPGISFSFSTANSVSLSPAGSNTSSELGSSWQQSSSSNFVNNQLGKG 575


>07_03_0982 +
           23116343-23117089,23117227-23117313,23117424-23117555,
           23118135-23118269,23118644-23118709,23118797-23118907,
           23119237-23119329,23119555-23119659,23119752-23119829
          Length = 517

 Score = 32.3 bits (70), Expect = 3.0
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 719 PPPAHSSTTNQQQNGSYFDFERWNLPPPPPKMFPGASAFGSH---ATNFANQHQALAMPH 775
           PP A S     Q  G    +   N  P PP+  P  + + S+   A   A QH   A P 
Sbjct: 61  PPSAPSYAPPPQYAGYAPPYNNPNPAPYPPESSPAPAPYYSYPPTAAGVATQHAPAAEPS 120

Query: 776 GHALTYFPPFHLGPHP 791
              L Y  P++ G  P
Sbjct: 121 PAPLPYDAPYYGGYQP 136


>02_03_0226 - 16591383-16592030,16592132-16592211,16592246-16592971,
            16593060-16593192,16596839-16597518,16597604-16597666,
            16597740-16597916,16598414-16598542,16598638-16598796,
            16599057-16599224,16599418-16599519,16599812-16599857
          Length = 1036

 Score = 31.9 bits (69), Expect = 4.0
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 1007 DPRYYNLNKDRKRKYDGTEESAYDAEEEARRLNKPVLNVPSTPLNDKAKKG 1057
            D R     + RKRK + T+E    +E EA  LN     +P T +N+ A  G
Sbjct: 81   DDRNKKARERRKRKKEETQEETQASEREASHLNITPRRLPFTIINNVAHYG 131


>01_06_0781 + 31962661-31963089,31963174-31963228,31964310-31964557,
            31965080-31965281,31965793-31965912,31965976-31966100,
            31966182-31966288,31966726-31966792
          Length = 450

 Score = 31.5 bits (68), Expect = 5.2
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 1224 PVKVRSQTHLETTVELIRSEMPFDDCNFIEKRMLETQMYQENFEVYIQTLISHALDPNFL 1283
            P+ +    H ET +     E    + N I++  L+ Q+ + N+E    + I H L PN  
Sbjct: 125  PLAIVDYAHDETAMS---PEQEDGEINGIDRSGLDAQVAEGNYEEKTLSGIVHILTPNIR 181

Query: 1284 TEIFQEQD 1291
            +E+ Q+ D
Sbjct: 182  SEMSQQND 189


>05_03_0565 - 15509949-15511304
          Length = 451

 Score = 30.7 bits (66), Expect = 9.1
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 12/82 (14%)

Query: 1390 LYSRISHQKYLMYVECSKRVAEK--RMQNPSKDTTVILNELLADEAWLSQ-----LFRDV 1442
            +Y +I   K+     CS+ +     RM +P  DT + + E+  D  WL Q      F  +
Sbjct: 255  MYRKICAAKFRCPKWCSQELRSLIGRMLDPEPDTRIKIGEIF-DHPWLQQDGSSSSFGMI 313

Query: 1443 R----HSWAEAESWERKMRHAM 1460
            +    HS  E E WE ++  AM
Sbjct: 314  QAASSHSKPEVEKWEAELEQAM 335


>05_03_0343 +
           12732673-12732792,12732903-12733091,12733220-12733387,
           12733468-12733522,12733646-12733704,12734784-12734909,
           12737281-12737409,12737486-12737540,12737633-12737808,
           12737903-12737986,12738602-12738625
          Length = 394

 Score = 30.7 bits (66), Expect = 9.1
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 510 MYHSPMN-SINSPQPHNDHYNKLAPRSPLDASVARPPSQNSQVAYPSVITRALGIEQNKT 568
           MY+ P   S  +P P +D  N +A     D    RP S       P +  R LG++ N  
Sbjct: 121 MYNIPTGPSDYAPSPISDVRNGMAMNGA-DPKTGRP-SPYMPPPSPWMTQRPLGVDVNVA 178

Query: 569 YTENRYD 575
           Y ENR D
Sbjct: 179 YVENRED 185


>02_02_0224 - 8033098-8034552
          Length = 484

 Score = 30.7 bits (66), Expect = 9.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 742 NLPPPPPKMFPGASAFGSHATNFANQHQALAMPHGHALT 780
           +LPPPPP +   AS    H    A   + L   HG A+T
Sbjct: 12  SLPPPPPHVVLMASPGAGHLIPLAELARRLVSDHGFAVT 50


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.127    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,728,495
Number of Sequences: 37544
Number of extensions: 1235068
Number of successful extensions: 2826
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2816
Number of HSP's gapped (non-prelim): 16
length of query: 1465
length of database: 14,793,348
effective HSP length: 91
effective length of query: 1374
effective length of database: 11,376,844
effective search space: 15631783656
effective search space used: 15631783656
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 66 (30.7 bits)